Michael C. Schatz

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 13

Top Topics

Answering Queries

Autism Spectrum Disorder

Top Venues

Int. J. Comput. Biol. Drug Des.

Publications

Stephen Hwang, Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead
MEM-Based Pangenome Indexing for k-mer Queries. WABI (2024)
Aysam Guerler, Dannon Baker, Marius van den Beek, Björn A. Grüning, Dave Bouvier, Nate Coraor, Stephen D. Shank, Jordan D. Zehr, Michael C. Schatz, Anton Nekrutenko
Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy. BMC Bioinform. 24 (1) (2023)
Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. Nucleic Acids Res. 50 (W1) (2022)
Rosa Alcazar, Maria Alvarez, Rachel Arnold, Mentewab Ayalew, Lyle G. Best, Michael C. Campbell, Kamal Chowdhury, Katherine E. L. Cox, Christina Daulton, Youping Deng, Carla Easter, Karla Fuller, Shazia Tabassum Hakim, Ava M. Hoffman, Natalie Kucher, Andrew Lee, Joslynn Lee, Jeffrey T. Leek, Robert Meller, Loyda B. Méndez, Miguel P. Méndez-González, Stephen Mosher, Michele Nishiguchi, Siddharth Pratap, Tiffany Rolle, Sourav Roy, Rachel Saidi, Michael C. Schatz, Shurjo Sen, James Sniezek, Edu Suarez Martinez, Frederick Tan, Jennifer Vessio, Karriem Watson, Wendy Westbroek, Joseph Wilcox, Xianfa Xie
Diversifying the Genomic Data Science Research Community. CoRR (2022)
Arun Das, Michael C. Schatz
Sketching and sampling approaches for fast and accurate long read classification. BMC Bioinform. 23 (1) (2022)
Melanie Kirsche, Arun Das, Michael C. Schatz
Sapling: accelerating suffix array queries with learned data models. Bioinform. 37 (6) (2021)
Maria Nattestad, Robert Aboukhalil, Chen-Shan Chin, Michael C. Schatz
Ribbon: intuitive visualization for complex genomic variation. Bioinform. 37 (3) (2021)
Ruibang Luo, Tak Wah Lam, Michael C. Schatz
Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants. Int. J. Comput. Biol. Drug Des. 13 (5/6) (2020)
Charlotte A. Darby, Ravi Gaddipati, Michael C. Schatz, Ben Langmead
Vargas: heuristic-free alignment for assessing linear and graph read aligners. Bioinform. 36 (12) (2020)
Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz
Recovering rearranged cancer chromosomes from karyotype graphs. BMC Bioinform. (20) (2019)
Gregory W. Vurture, Fritz J. Sedlazeck, Maria Nattestad, Charles J. Underwood, Han Fang, James Gurtowski, Michael C. Schatz
GenomeScope: fast reference-free genome profiling from short reads. Bioinform. 33 (14) (2017)
Mohammad Ruhul Amin, Steven Skiena, Michael C. Schatz
NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads. ICCABS (2016)
Maria Nattestad, Michael C. Schatz
Assemblytics: a web analytics tool for the detection of variants from an assembly. Bioinform. 32 (19) (2016)
Shoshana Marcus, Hayan Lee, Michael C. Schatz
SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips. Bioinform. 30 (24) (2014)
Philip D. Blood, Shoshana Marcus, Michael C. Schatz
Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight. XSEDE (2014)
Matthew A. Titmus, James Gurtowski, Michael C. Schatz
Answering the demands of digital genomics. Concurr. Comput. Pract. Exp. 26 (4) (2014)
Giuseppe Narzisi, Bud Mishra, Michael C. Schatz
On Algorithmic Complexity of Biomolecular Sequence Assembly Problem. AlCoB (2014)
Ivan Iossifov, Brian J. O'Roak, Stephan J. Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A. Stessman, Kali T. Witherspoon, Laura Vives, Karynne E. Patterson, Joshua D. Smith, Bryan Paeper, Deborah A. Nickerson, Jeanselle Dea, Shan Dong, Luis E. Gonzalez, Jeffrey D. Mandell, Shrikant M. Mane, Michael T. Murtha, Catherine A. Sullivan, Michael F. Walker, Zainulabedin Waqar, Liping Wei, A. Jeremy Willsey, Boris Yamrom, Yoon-ha Lee, Ewa Grabowska, Ertugrul Dalkic, Zi-Hua Wang, Steven Marks, Peter Andrews, Anthony Leotta, Jude Kendall, Inessa Hakker, Julie Rosenbaum, Beicong Ma, Linda Rodgers, Jennifer Troge, Giuseppe Narzisi, Seungtai Yoon, Michael C. Schatz, Kenny Ye, W. Richard McCombie, Jay Shendure, Evan E. Eichler, Matthew W. State, Michael Wigler
coding mutations to autism spectrum disorder. Nat. 515 (7526) (2014)
Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings Bioinform. 14 (2) (2013)
Hayan Lee, Michael C. Schatz
Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score. Bioinform. 28 (16) (2012)
Carl Kingsford, Michael C. Schatz, Mihai Pop
Assembly complexity of prokaryotic genomes using short reads. BMC Bioinform. 11 (2010)
Michael C. Schatz
CloudBurst: highly sensitive read mapping with MapReduce. Bioinform. 25 (11) (2009)
Saket Navlakha, Michael C. Schatz, Carl Kingsford
Revealing Biological Modules via Graph Summarization. J. Comput. Biol. 16 (2) (2009)
Cole Trapnell, Michael C. Schatz
Optimizing data intensive GPGPU computations for DNA sequence alignment. Parallel Comput. 35 (8-9) (2009)
Michael C. Schatz, Cole Trapnell, Arthur L. Delcher, Amitabh Varshney
High-throughput sequence alignment using Graphics Processing Units. BMC Bioinform. 8 (2007)