High-throughput sequence alignment using Graphics Processing Units.
Michael C. SchatzCole TrapnellArthur L. DelcherAmitabh VarshneyPublished in: BMC Bioinform. (2007)
Keyphrases
- high throughput
- sequence alignment
- graphics processing units
- general purpose
- microarray
- genome wide
- pairwise
- biological data
- parallel processing
- systems biology
- parallel computing
- real time
- dynamic programming
- computing systems
- massively parallel
- floating point
- protein sequences
- parallel implementation
- genomic data
- binding sites
- efficient implementation
- high performance computing
- data acquisition
- mass spectrometry
- gene expression
- protein protein interactions
- protein structure prediction
- low cost
- gene ontology
- parallel machines
- proteomic data