Ruibang Luo

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 20

Top Topics

Graph Representation

Efficient Indexing

Top Venues

Publications

Lei Chen, Junhao Su, Zhenxian Zheng, Tak Wah Lam, Ruibang Luo
Large-scale Dataset and Effective Model for Variant-Disease Associations Extraction. BCB (2023)
Huijing Yu, Zhenxian Zheng, Junhao Su, Tak Wah Lam, Ruibang Luo
Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP. BMC Bioinform. 24 (1) (2023)
Lei Chen, Junhao Su, Tak Wah Lam, Ruibang Luo
Exploring Pair-Aware Triangular Attention for Biomedical Relation Extraction. BCB (2023)
Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu
Generalized radiograph representation learning via cross-supervision between images and free-text radiology reports. Nat. Mach. Intell. 4 (1) (2022)
Yekai Zhou, Amy Wing-Sze Leung, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo
Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing. BMC Bioinform. 23 (1) (2022)
Zhenxian Zheng, Shumin Li, Junhao Su, Amy Wing-Sze Leung, Tak Wah Lam, Ruibang Luo
Symphonizing pileup and full-alignment for deep learning-based long-read variant calling. Nat. Comput. Sci. 2 (12) (2022)
Junhao Su, Zhenxian Zheng, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo
Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks. Briefings Bioinform. 23 (5) (2022)
Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu
Generalized Radiograph Representation Learning via Cross-supervision between Images and Free-text Radiology Reports. CoRR (2021)
Ye Wu, Hing-Fung Ting, Tak Wah Lam, Ruibang Luo
BioNumQA-BERT: answering biomedical questions using numerical facts with a deep language representation model. BCB (2021)
Boxuan Li, Reynold Cheng, Jiafeng Hu, Yixiang Fang, Min Ou, Ruibang Luo, Kevin Chen-Chuan Chang, Xuemin Lin
MC-Explorer: Analyzing and Visualizing Motif-Cliques on Large Networks. ICDE (2020)
Ruibang Luo, Tak Wah Lam, Michael C. Schatz
Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants. Int. J. Comput. Biol. Drug Des. 13 (5/6) (2020)
Xu Cao, Fangzhou Lan, Chi-Man Liu, Tak Wah Lam, Ruibang Luo
ChromSeg: Two-Stage Framework for Overlapping Chromosome Segmentation and Reconstruction. BIBM (2020)
Ruibang Luo, Chak-Lim Wong, Yat-Sing Wong, Chi Ian Tang, Chi-Man Liu, Chi-Ming Leung, Tak Wah Lam
Exploring the limit of using a deep neural network on pileup data for germline variant calling. Nat. Mach. Intell. 2 (4) (2020)
Ye Wu, Ruibang Luo, Tak Wah Lam, Hing-Fung Ting, Junwen Wang
Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads. BCB (2020)
Wui Wang Lui, Amy W. S. Leung, Henry C. M. Leung, Yan Xin, Jade L. L. Teng, Patrick C. Y. Woo, Tak Wah Lam, Ruibang Luo
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics. BIBM (2020)
Ye Wu, Ruibang Luo, Henry C. M. Leung, Hing-Fung Ting, Tak Wah Lam
RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. RECOMB (2019)
Huijun Mai, Yifan Zhang, Dinghua Li, Henry Chi-Ming Leung, Ruibang Luo, Chi-Kwong Wong, Hing-Fung Ting, Tak Wah Lam
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment. Bioinform. 34 (21) (2018)
Dinghua Li, Henry Chi-Ming Leung, Chi-Kwong Wong, Yifan Zhang, Wai-Chun Law, Yan Xin, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract). ICCABS (2018)
Dinghua Li, Yukun Huang, Henry C. M. Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs. BMC Bioinform. 18 (S-12) (2017)
Huijun Mai, Dinghua Li, Yifan Zhang, Henry Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing. IWBBIO (2016)
Min Ou, Ricky Ma, Jeanno Cheung, Katie Lo, Patrick Yee, Tewei Luo, T. L. Chan, Chun Hang Au, Ava Kwong, Ruibang Luo, Tak Wah Lam
database.bio: a web application for interpreting human variations. Bioinform. 31 (24) (2015)
Dinghua Li, Chi-Man Liu, Ruibang Luo, Kunihiko Sadakane, Tak Wah Lam
graph. Bioinform. 31 (10) (2015)
Ruibang Luo, Jeanno Cheung, Edward Wu, Heng Wang, Sze-Hang Chan, Wai-Chun Law, Guangzhu He, Chang Yu, Chi-Man Liu, Dazong Zhou, Yingrui Li, Ruiqiang Li, Jun Wang, Xiaoqian Zhu, Shaoliang Peng, Tak Wah Lam
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC). BMC Bioinform. 16 (S-7) (2015)
Yinlong Xie, Gengxiong Wu, Jingbo Tang, Ruibang Luo, Jordan Patterson, Shanlin Liu, Weihua Huang, Guangzhu He, Shengchang Gu, Shengkang Li, Xin Zhou, Tak Wah Lam, Yingrui Li, Xun Xu, Gane Ka-Shu Wong, Jun Wang
transcriptome assembly with short RNA-Seq reads. Bioinform. 30 (12) (2014)
Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak Wah Lam
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC). CoRR (2014)
Weixin Wang, Panwen Wang, Feng Xu, Ruibang Luo, Maria P. Wong, Tak Wah Lam, Junwen Wang
FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data. Bioinform. 30 (17) (2014)
Chi-Man Liu, Ruibang Luo, Tak Wah Lam
GPU-Accelerated BWT Construction for Large Collection of Short Reads. CoRR (2014)
Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo, Siu-Ming Yiu, Yingrui Li, Bingqiang Wang, Chang Yu, Xiaowen Chu, Kaiyong Zhao, Ruiqiang Li, Tak Wah Lam
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. Bioinform. 28 (6) (2012)
Binghang Liu, Jianying Yuan, Siu-Ming Yiu, Zhenyu Li, Yinlong Xie, Yanxiang Chen, Yujian Shi, Hao Zhang, Yingrui Li, Tak Wah Lam, Ruibang Luo
-mer-based pair-end reads connection tool to facilitate genome assembly. Bioinform. 28 (22) (2012)
Ruibang Luo, Chang Yu, Chi-Man Liu, Tak Wah Lam, Thomas K. F. Wong, Siu-Ming Yiu, Ruiqiang Li, Hing-Fung Ting
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples. BCB (2012)