Tak Wah Lam

ORCID

Publication Activity (10 Years)

Years Active: 1989-2023
Publications (10 Years): 24

Top Venues

Publications

Tik Yu Yim, Yuxuan Zhang, Wenting Tan, Tak Wah Lam, Siu Ming Yiu
Meticulously Analyzing ESG Disclosure: A Data-Driven Approach. BigData (2023)
Lei Chen, Junhao Su, Zhenxian Zheng, Tak Wah Lam, Ruibang Luo
Large-scale Dataset and Effective Model for Variant-Disease Associations Extraction. BCB (2023)
Huijing Yu, Zhenxian Zheng, Junhao Su, Tak Wah Lam, Ruibang Luo
Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP. BMC Bioinform. 24 (1) (2023)
Mengmeng Kuang, Yong Zhang, Tak Wah Lam, Hing-Fung Ting
MLProbs: A Data-Centric Pipeline for Better Multiple Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Lei Chen, Junhao Su, Tak Wah Lam, Ruibang Luo
Exploring Pair-Aware Triangular Attention for Biomedical Relation Extraction. BCB (2023)
Yekai Zhou, Amy Wing-Sze Leung, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo
Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing. BMC Bioinform. 23 (1) (2022)
Zhenxian Zheng, Shumin Li, Junhao Su, Amy Wing-Sze Leung, Tak Wah Lam, Ruibang Luo
Symphonizing pileup and full-alignment for deep learning-based long-read variant calling. Nat. Comput. Sci. 2 (12) (2022)
Junhao Su, Zhenxian Zheng, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo
Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks. Briefings Bioinform. 23 (5) (2022)
Marek Chrobak, Mordecai J. Golin, Tak Wah Lam, Dorian Nogneng
Scheduling with gaps: new models and algorithms. J. Sched. 24 (4) (2021)
Ye Wu, Hing-Fung Ting, Tak Wah Lam, Ruibang Luo
BioNumQA-BERT: answering biomedical questions using numerical facts with a deep language representation model. BCB (2021)
Ruibang Luo, Tak Wah Lam, Michael C. Schatz
Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants. Int. J. Comput. Biol. Drug Des. 13 (5/6) (2020)
Xu Cao, Fangzhou Lan, Chi-Man Liu, Tak Wah Lam, Ruibang Luo
ChromSeg: Two-Stage Framework for Overlapping Chromosome Segmentation and Reconstruction. BIBM (2020)
Ruibang Luo, Chak-Lim Wong, Yat-Sing Wong, Chi Ian Tang, Chi-Man Liu, Chi-Ming Leung, Tak Wah Lam
Exploring the limit of using a deep neural network on pileup data for germline variant calling. Nat. Mach. Intell. 2 (4) (2020)
Ye Wu, Ruibang Luo, Tak Wah Lam, Hing-Fung Ting, Junwen Wang
Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads. BCB (2020)
Wui Wang Lui, Amy W. S. Leung, Henry C. M. Leung, Yan Xin, Jade L. L. Teng, Patrick C. Y. Woo, Tak Wah Lam, Ruibang Luo
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics. BIBM (2020)
Ye Wu, Ruibang Luo, Henry C. M. Leung, Hing-Fung Ting, Tak Wah Lam
RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. RECOMB (2019)
Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Sharma V. Thankachan, Hing-Fung Ting, Yilin Yang
Dictionary Matching with a Bounded Gap in Pattern or in Text. Algorithmica 80 (2) (2018)
Huijun Mai, Yifan Zhang, Dinghua Li, Henry Chi-Ming Leung, Ruibang Luo, Chi-Kwong Wong, Hing-Fung Ting, Tak Wah Lam
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment. Bioinform. 34 (21) (2018)
Dinghua Li, Henry Chi-Ming Leung, Chi-Kwong Wong, Yifan Zhang, Wai-Chun Law, Yan Xin, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract). ICCABS (2018)
Dinghua Li, Yukun Huang, Henry C. M. Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs. BMC Bioinform. 18 (S-12) (2017)
Haobin Yao, Tak Wah Lam, H. F. Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu
Accurate annotation of metagenomic data without species-level references. Int. J. Data Min. Bioinform. 19 (4) (2017)
Huijun Mai, Dinghua Li, Yifan Zhang, Henry Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing. IWBBIO (2016)
Yongtao Ye, Tak Wah Lam, Hing-Fung Ting
PnpProbs: a better multiple sequence alignment tool by better handling of guide trees. BMC Bioinform. 17 (S-8) (2016)
Haobin Yao, Tak Wah Lam, Hing-Fung Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu
Accurate annotation of metagenomic data without species-level references. BIBM (2016)
Min Ou, Ricky Ma, Jeanno Cheung, Katie Lo, Patrick Yee, Tewei Luo, T. L. Chan, Chun Hang Au, Ava Kwong, Ruibang Luo, Tak Wah Lam
database.bio: a web application for interpreting human variations. Bioinform. 31 (24) (2015)
Marek Chrobak, Mordecai J. Golin, Tak Wah Lam, Dorian Nogneng
Scheduling with Gaps: New Models and Algorithms. CIAC (2015)
Jianqiao Zhu, Ho-Leung Chan, Tak Wah Lam
Non-clairvoyant Weighted Flow Time Scheduling on Different Multi-processor Models. Theory Comput. Syst. 56 (1) (2015)
Huijun Mai, Tak Wah Lam, Hing-Fung Ting
A simple and economical method for improving whole-genome alignment. ICCABS (2015)
Qing Zhan, Yongtao Ye, Tak Wah Lam, Siu-Ming Yiu, Yadong Wang, Hing-Fung Ting
Improving multiple sequence alignment by using better guide trees. BMC Bioinform. 16 (S-5) (2015)
Dinghua Li, Chi-Man Liu, Ruibang Luo, Kunihiko Sadakane, Tak Wah Lam
graph. Bioinform. 31 (10) (2015)
Ruibang Luo, Jeanno Cheung, Edward Wu, Heng Wang, Sze-Hang Chan, Wai-Chun Law, Guangzhu He, Chang Yu, Chi-Man Liu, Dazong Zhou, Yingrui Li, Ruiqiang Li, Jun Wang, Xiaoqian Zhu, Shaoliang Peng, Tak Wah Lam
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC). BMC Bioinform. 16 (S-7) (2015)
Leizhen Cai, Siu-Wing Cheng, Tak Wah Lam
Guest Editors Foreword. Algorithmica 73 (4) (2015)
Menglu Li, Micheal Cheng, Yongtao Ye, Wing-Kai Hon, Hing-Fung Ting, Tak Wah Lam, Cy Tang, Thomas Wong, Siu-Ming Yiu
Predicting RNA Secondary Structures: One-grammar-fits-all Solution. ISBRA (2015)
Wing-Kai Hon, Tsung-Han Ku, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Sharma V. Thankachan, Jeffrey Scott Vitter
Compressing Dictionary Matching Index via Sparsification Technique. Algorithmica 72 (2) (2015)
Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Sharma V. Thankachan, Hing-Fung Ting, Yilin Yang
Dictionary Matching with Uneven Gaps. CPM (2015)
Yongtao Ye, David Wai-Lok Cheung, Yadong Wang, Siu-Ming Yiu, Qing Zhan, Tak Wah Lam, Hing-Fung Ting
GLProbs: Aligning Multiple Sequences Adaptively. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (1) (2015)
Yinlong Xie, Gengxiong Wu, Jingbo Tang, Ruibang Luo, Jordan Patterson, Shanlin Liu, Weihua Huang, Guangzhu He, Shengchang Gu, Shengkang Li, Xin Zhou, Tak Wah Lam, Yingrui Li, Xun Xu, Gane Ka-Shu Wong, Jun Wang
transcriptome assembly with short RNA-Seq reads. Bioinform. 30 (12) (2014)
Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak Wah Lam
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC). CoRR (2014)
Marek Chrobak, Mordecai J. Golin, Tak Wah Lam, Dorian Nogneng
Scheduling with Gaps: New Models and Algorithms. CoRR (2014)
Weixin Wang, Panwen Wang, Feng Xu, Ruibang Luo, Maria P. Wong, Tak Wah Lam, Junwen Wang
FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data. Bioinform. 30 (17) (2014)
Chi-Man Liu, Ruibang Luo, Tak Wah Lam
GPU-Accelerated BWT Construction for Large Collection of Short Reads. CoRR (2014)
Tak Wah Lam, Lap-Kei Lee, Isaac Kar-Keung To, Prudence W. H. Wong
Online Speed Scaling Based on Active Job Count to Minimize Flow Plus Energy. Algorithmica 65 (3) (2013)
Jikun Wu, Wenqian Zhang, Songbo Huang, Zengquan He, Yanbing Cheng, Jun Wang, Tak Wah Lam, Zhiyu Peng, Siu-Ming Yiu
SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads. Bioinform. 29 (23) (2013)
Bay-Yuan Hsu, Thomas K. F. Wong, Wing-Kai Hon, Xinyi Liu, Tak Wah Lam, Siu-Ming Yiu
A Local Structural Prediction Algorithm for RNA Triple Helix Structure. PRIB (2013)
Yongtao Ye, David W. Cheung, Yadong Wang, Siu-Ming Yiu, Qing Zhan, Tak Wah Lam, Hing-Fung Ting
GLProbs: Aligning multiple sequences adaptively. BCB (2013)
Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Jianqiao Zhu
Nonclairvoyant sleep management and flow-time scheduling on multiple processors. SPAA (2013)
Xuan Liu, David Wai-Lok Cheung, Hing-Fung Ting, Tak Wah Lam, Siu-Ming Yiu
LCR_Finder: A de Novo Low Copy Repeat Finder for Human Genome. ISBRA (2013)
Ho-Leung Chan, Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Rongbin Li, Chi-Man Liu
Competitive Online Algorithms for Multiple-Machine Power Management and Weighted Flow Time. CATS (2013)
Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee
Scheduling for weighted flow time and energy with rejection penalty. Theor. Comput. Sci. 470 (2013)
Ho-Leung Chan, Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Jianqiao Zhu
Non-clairvoyant weighted flow time scheduling with rejection penalty. SPAA (2012)
Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu
Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (1) (2012)
Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting
Continuous Monitoring of Distributed Data Streams over a Time-Based Sliding Window. Algorithmica 62 (3-4) (2012)
Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo, Siu-Ming Yiu, Yingrui Li, Bingqiang Wang, Chang Yu, Xiaowen Chu, Kaiyong Zhao, Ruiqiang Li, Tak Wah Lam
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. Bioinform. 28 (6) (2012)
Christopher Ma, Thomas K. F. Wong, Tak Wah Lam, Wing-Kai Hon, Kunihiko Sadakane, Siu-Ming Yiu
An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Ho-Leung Chan, Tak Wah Lam, Rongbin Li
Online Flow Time Scheduling in the Presence of Preemption Overhead. APPROX-RANDOM (2012)
Binghang Liu, Jianying Yuan, Siu-Ming Yiu, Zhenyu Li, Yinlong Xie, Yanxiang Chen, Yujian Shi, Hao Zhang, Yingrui Li, Tak Wah Lam, Ruibang Luo
-mer-based pair-end reads connection tool to facilitate genome assembly. Bioinform. 28 (22) (2012)
Ruibang Luo, Chang Yu, Chi-Man Liu, Tak Wah Lam, Thomas K. F. Wong, Siu-Ming Yiu, Ruiqiang Li, Hing-Fung Ting
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples. BCB (2012)
Tak Wah Lam, Lap-Kei Lee, Isaac Kar-Keung To, Prudence W. H. Wong
Improved multi-processor scheduling for flow time and energy. J. Sched. 15 (1) (2012)
Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee
Scheduling for Weighted Flow Time and Energy with Rejection Penalty. STACS (2011)
Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Brenda W. Y. Cheung, Siu-Ming Yiu
Structural Alignment of RNA with Complex Pseudoknot Structure. J. Comput. Biol. 18 (1) (2011)
Hing-Fung Ting, Lap-Kei Lee, Ho-Leung Chan, Tak Wah Lam
Approximating Frequent Items in Asynchronous Data Stream over a Sliding Window. Algorithms 4 (3) (2011)
Ho-Leung Chan, Jeff Edmonds, Tak Wah Lam, Lap-Kei Lee, Alberto Marchetti-Spaccamela, Kirk Pruhs
Nonclairvoyant Speed Scaling for Flow and Energy. Algorithmica 61 (3) (2011)
Xuan Liu, Shing-Wan Choi, Thomas K. F. Wong, Tak Wah Lam, Siu-Ming Yiu
Detection of novel tandem duplication with next-generation sequencing. BCB (2011)
Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting, Pan Zhang
Non-clairvoyant Scheduling for Weighted Flow Time and Energy on Speed Bounded Processors. Chic. J. Theor. Comput. Sci. 2011 (2011)
Thomas K. F. Wong, Hui-Ting Yu, Bay-Yuan Hsu, Tak Wah Lam, Wing-Kai Hon, Siu-Ming Yiu
Algorithms for pseudoknot classification. BCB (2011)
Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter
Cache-oblivious index for approximate string matching. Theor. Comput. Sci. 412 (29) (2011)
Jianqiao Zhu, Ho-Leung Chan, Tak Wah Lam
Non-clairvoyant Weighted Flow Time Scheduling on Different Multi-processor Models. WAOA (2011)
Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Jiangwei Pan, Hing-Fung Ting, Qin Zhang
Edit Distance to Monotonicity in Sliding Windows CoRR (2011)
Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Chi-Man Liu, Hing-Fung Ting
Sleep Management on Multiple Machines for Energy and Flow Time. ICALP (1) (2011)
Thomas K. F. Wong, Kwok-Lung Wan, Bay-Yuan Hsu, Brenda W. Y. Cheung, Wing-Kai Hon, Tak Wah Lam, Siu-Ming Yiu
RNASAlign: RNA Structural Alignment System. Bioinform. 27 (15) (2011)
Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Jiangwei Pan, Hing-Fung Ting, Qin Zhang
Edit Distance to Monotonicity in Sliding Windows. ISAAC (2011)
Ho-Leung Chan, Tak Wah Lam, Rongbin Li
Energy-Efficient Due Date Scheduling. TAPAS (2011)
Ho-Leung Chan, Tak Wah Lam, Rongbin Li
Tradeoff between energy and throughput for online deadline scheduling. Sustain. Comput. Informatics Syst. 1 (3) (2011)
Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong
A linear size index for approximate pattern matching. J. Discrete Algorithms 9 (4) (2011)
Tak Wah Lam, Chi-Man Liu, Hing-Fung Ting
Online Tracking of the Dominance Relationship of Distributed Multi-dimensional Data. WAOA (2010)
Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee
Non-clairvoyant Speed Scaling for Weighted Flow Time. ESA (1) (2010)
Thomas K. F. Wong, Brenda W. Y. Cheung, Tak Wah Lam, Siu-Ming Yiu
Local Structural Alignment of RNA with Affine Gap Model. ISBRA (2010)
Xin Han, Tak Wah Lam, Lap-Kei Lee, Isaac Kar-Keung To, Prudence W. H. Wong
Deadline scheduling and power management for speed bounded processors. Theor. Comput. Sci. 411 (40-42) (2010)
Ho-Leung Chan, Tak Wah Lam, Rongbin Li
Tradeoff between Energy and Throughput for Online Deadline Scheduling. WAOA (2010)
Thomas K. F. Wong, Tak Wah Lam, Siu-Ming Yiu, Simon C. K. Wong
Improving the accuracy of signal transduction pathway construction using level-2 neighbours. Int. J. Bioinform. Res. Appl. 6 (6) (2010)
Songbo Huang, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Siu-Ming Yiu
Indexing Similar DNA Sequences. AAIM (2010)
Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong
Compressed Indexes for Approximate String Matching. Algorithmica 58 (2) (2010)
Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting, Peng Zhang
Non-clairvoyant Scheduling for Weighted Flow Time and Energy on Speed Bounded Processors. CATS (2010)
Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting
Continuous Monitoring of Distributed Data Streams over a Time-based Sliding Window. STACS (2010)
Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting
Approximating Frequent Items in Asynchronous Data Stream over a Sliding Window. WAOA (2009)
Ho-Leung Chan, Jeff Edmonds, Tak Wah Lam, Lap-Kei Lee, Alberto Marchetti-Spaccamela, Kirk Pruhs
Nonclairvoyant Speed Scaling for Flow and Energy. STACS (2009)
Alan Tam, Edward Wu, Tak Wah Lam, Siu-Ming Yiu
Succinct Text Indexing with Wildcards. SPIRE (2009)
Ruiqiang Li, Chang Yu, Yingrui Li, Tak Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang
SOAP2: an improved ultrafast tool for short read alignment. Bioinform. 25 (15) (2009)
Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter
Succinct Index for Dynamic Dictionary Matching. ISAAC (2009)
Ho-Leung Chan, Jeff Edmonds, Tak Wah Lam, Lap-Kei Lee, Alberto Marchetti-Spaccamela, Kirk Pruhs
Nonclairvoyant Speed Scaling for Flow and Energy CoRR (2009)
Tak Wah Lam, Ruiqiang Li, Alan Tam, Simon C. K. Wong, Edward Wu, Siu-Ming Yiu
High Throughput Short Read Alignment via Bi-directional BWT. BIBM (2009)
Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting, Isaac Kar-Keung To, Prudence W. H. Wong
Sleep with Guilt and Work Faster to Minimize Flow Plus Energy. ICALP (1) (2009)
Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung
The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning. BICoB (2009)
Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
Structural Alignment of RNA with Complex Pseudoknot Structure. WABI (2009)
Ho-Leung Chan, Joseph Wun-Tat Chan, Tak Wah Lam, Lap-Kei Lee, Kin-Sum Mak, Prudence W. H. Wong
Optimizing throughput and energy in online deadline scheduling. ACM Trans. Algorithms 6 (1) (2009)
Thomas K. F. Wong, Tak Wah Lam, P. Y. Chan, Siu-Ming Yiu
Correcting short reads with high error rates for improved sequencing result. Int. J. Bioinform. Res. Appl. 5 (2) (2009)
Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting
Continuous Monitoring of Distributed Data Streams over a Time-based Sliding Window CoRR (2009)
Ho-Leung Chan, Tak Wah Lam, Kin-Shing Liu
Extra Unit-Speed Machines Are Almost as Powerful as Speedy Machines for Flow Time Scheduling. SIAM J. Comput. 37 (5) (2008)
Tak Wah Lam, Lap-Kei Lee, Isaac Kar-Keung To, Prudence W. H. Wong
Competitive non-migratory scheduling for flow time and energy. SPAA (2008)
Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Chi-Kwong Wong, Siu-Ming Yiu
Compressed indexing and local alignment of DNA. Bioinform. 24 (6) (2008)

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Publication Activity (10 Years)

Top Topics

Top Venues

Tak Wah Lam