Thomas K. F. Wong

Publication Activity (10 Years)

Years Active: 2007-2021
Publications (10 Years): 4

Top Topics

Rna Secondary Structure Prediction

Memory Efficient

Geometrical Features

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

Publications

Thomas K. F. Wong, Teng Li, Louis Ranjard, Steven H. Wu, Jeet Sukumaran, Allen G. Rodrigo
An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes. PLoS Comput. Biol. 17 (9) (2021)
Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo
Correction to: Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage. BMC Bioinform. 21 (1) (2020)
Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo
Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage. BMC Bioinform. 20 (1) (2019)
Thomas K. F. Wong, Louis Ranjard, Yu Lin, Allen G. Rodrigo
HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations. BMC Bioinform. 19 (1) (2018)
Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. Bioinform. 30 (8) (2014)
Bay-Yuan Hsu, Thomas K. F. Wong, Wing-Kai Hon, Xinyi Liu, Tak Wah Lam, Siu-Ming Yiu
A Local Structural Prediction Algorithm for RNA Triple Helix Structure. PRIB (2013)
Shirley W. I. Siu, Thomas K. F. Wong, Simon Fong
Comparison of Cutoff Strategies for Geometrical Features in Machine Learning-Based Scoring Functions. ADMA (2) (2013)
Thomas K. F. Wong, Siu-Ming Yiu
Structural Alignment of RNA with Triple Helix Structure. J. Comput. Biol. 19 (4) (2012)
Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu
Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (1) (2012)
Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo, Siu-Ming Yiu, Yingrui Li, Bingqiang Wang, Chang Yu, Xiaowen Chu, Kaiyong Zhao, Ruiqiang Li, Tak Wah Lam
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. Bioinform. 28 (6) (2012)
Christopher Ma, Thomas K. F. Wong, Tak Wah Lam, Wing-Kai Hon, Kunihiko Sadakane, Siu-Ming Yiu
An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Ruibang Luo, Chang Yu, Chi-Man Liu, Tak Wah Lam, Thomas K. F. Wong, Siu-Ming Yiu, Ruiqiang Li, Hing-Fung Ting
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples. BCB (2012)
Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Brenda W. Y. Cheung, Siu-Ming Yiu
Structural Alignment of RNA with Complex Pseudoknot Structure. J. Comput. Biol. 18 (1) (2011)
Xuan Liu, Shing-Wan Choi, Thomas K. F. Wong, Tak Wah Lam, Siu-Ming Yiu
Detection of novel tandem duplication with next-generation sequencing. BCB (2011)
Thomas K. F. Wong, Hui-Ting Yu, Bay-Yuan Hsu, Tak Wah Lam, Wing-Kai Hon, Siu-Ming Yiu
Algorithms for pseudoknot classification. BCB (2011)
Thomas K. F. Wong, Kwok-Lung Wan, Bay-Yuan Hsu, Brenda W. Y. Cheung, Wing-Kai Hon, Tak Wah Lam, Siu-Ming Yiu
RNASAlign: RNA Structural Alignment System. Bioinform. 27 (15) (2011)
Thomas K. F. Wong, Siu-Ming Yiu
Prediction of Minimum Free Energy Structure for Simple Non-standard Pseudoknot. BIOSTEC (Selected Papers) (2010)
Yizhen Jia, Thomas K. F. Wong, You-Qiang Song, David K. Smith, Siu-Ming Yiu
Investigation of the Lineage and Tissue Specificity of Genes. BIOCOMP (2010)
Thomas K. F. Wong, Brenda W. Y. Cheung, Tak Wah Lam, Siu-Ming Yiu
Local Structural Alignment of RNA with Affine Gap Model. ISBRA (2010)
Thomas K. F. Wong, Tak Wah Lam, Siu-Ming Yiu, Simon C. K. Wong
Improving the accuracy of signal transduction pathway construction using level-2 neighbours. Int. J. Bioinform. Res. Appl. 6 (6) (2010)
Thomas K. F. Wong, Siu-Ming Yiu
Structure Prediction of Simple Non-standard Pseudoknot. BIOINFORMATICS (2010)
Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung
The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning. BICoB (2009)
Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
Structural Alignment of RNA with Complex Pseudoknot Structure. WABI (2009)
Thomas K. F. Wong, Tak Wah Lam, P. Y. Chan, Siu-Ming Yiu
Correcting short reads with high error rates for improved sequencing result. Int. J. Bioinform. Res. Appl. 5 (2) (2009)
Thomas K. F. Wong, Tak Wah Lam, Wanling Yang, Siu-Ming Yiu
Finding Alternative Splicing Patterns with Strong Support from expressed Sequences on Individual exons/introns. J. Bioinform. Comput. Biol. 6 (5) (2008)
Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu
A Memory Efficient Algorithm for Structural Alignment of RNAs with Embedded Simple Pseudoknots. APBC (2008)
Thomas K. F. Wong, Tak Wah Lam, W. L. Yang, Siu-Ming Yiu
Finding Alternative Splicing Patterns with Strong Support From Expressed Sequences. BIOCOMP (2007)