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Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots.
Thomas K. F. Wong
Y. S. Chiu
Tak Wah Lam
Siu-Ming Yiu
Published in:
IEEE ACM Trans. Comput. Biol. Bioinform. (2012)
Keyphrases
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rna sequences
rna secondary structures
secondary structure
rna secondary structure prediction
dna sequences
protein sequences
free energy
memory requirements
memory usage
memory space
stochastic context free grammars
computational methods
data sets
main memory
computing power
rna structures