Allen G. Rodrigo

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 5

Top Topics

Parameter Estimates

Hidden Markov Models

Top Venues

PLoS Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Weiling Li, Raunaq Malhotra, Steven H. Wu, Manjari Jha, Allen G. Rodrigo, Mary Poss, Raj Acharya
ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (3) (2024)
Thomas K. F. Wong, Teng Li, Louis Ranjard, Steven H. Wu, Jeet Sukumaran, Allen G. Rodrigo
An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes. PLoS Comput. Biol. 17 (9) (2021)
Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo
Correction to: Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage. BMC Bioinform. 21 (1) (2020)
Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo
Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage. BMC Bioinform. 20 (1) (2019)
Thomas K. F. Wong, Louis Ranjard, Yu Lin, Allen G. Rodrigo
HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations. BMC Bioinform. 19 (1) (2018)
Steven H. Wu, Allen G. Rodrigo
Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals. BMC Bioinform. 16 (2015)
Qinglong Zeng, Jeet Sukumaran, Steven H. Wu, Allen G. Rodrigo
Neutral Models of Microbiome Evolution. PLoS Comput. Biol. 11 (7) (2015)
Steven H. Wu, Michael A. Black, Robyn A. North, Allen G. Rodrigo
A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels. BMC Bioinform. 13 (2012)
Steven H. Wu, Michael A. Black, Robyn A. North, Kelly R. Atkinson, Allen G. Rodrigo
A Statistical Model to Identify Differentially Expressed Proteins in 2D PAGE Gels. PLoS Comput. Biol. 5 (9) (2009)
Matthew Goode, Allen G. Rodrigo
SQUINT: a multiple alignment program and editor. Bioinform. 23 (12) (2007)
Peter L. Meintjes, Allen G. Rodrigo
Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type-1. J. Bioinform. Comput. Biol. 3 (1) (2005)
Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo
A Brief Introduction to the Phylogentics Analysis Library V1.5. APBC (2004)
Peter L. Meintjes, Allen G. Rodrigo
Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1. APBC (2004)