Alexei J. Drummond

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 5

Top Topics

Bayesian Inference

Top Venues

PLoS Comput. Biol.

Publications

Alexei J. Drummond, Kylie Chen, Fábio K. Mendes, Dong Xie
LinguaPhylo: A probabilistic model specification language for reproducible phylogenetic analyses. PLoS Comput. Biol. 19 (7) (2023)
Alexei J. Drummond, Alex Popinga
Bayesian inference of the climbing grade scale. CoRR (2021)
Jordan Douglas, Richard Kingston, Alexei J. Drummond
Bayesian inference and comparison of stochastic transcription elongation models. PLoS Comput. Biol. 16 (2) (2020)
Jing Yang, Nicola F. Müller, Remco R. Bouckaert, Bing Xu, Alexei J. Drummond
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration. PLoS Comput. Biol. 15 (8) (2019)
Remco R. Bouckaert, Timothy G. Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K. Mendes, Nicola F. Müller, Huw A. Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni, Marc A. Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J. Drummond
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 15 (4) (2019)
Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates. PLoS Comput. Biol. 10 (4) (2014)
Alexandra Gavryushkina, David Welch, Tanja Stadler, Alexei J. Drummond
Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration. PLoS Comput. Biol. 10 (12) (2014)
Timothy G. Vaughan, Denise Kühnert, Alex Popinga, David Welch, Alexei J. Drummond
Efficient Bayesian inference under the structured coalescent. Bioinform. 30 (16) (2014)
Remco R. Bouckaert, Joseph Heled, Denise Kühnert, Timothy G. Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Comput. Biol. 10 (4) (2014)
Alexandra Gavryushkina, David Welch, Alexei J. Drummond
Recursive algorithms for phylogenetic tree counting. Algorithms Mol. Biol. 8 (2013)
Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey
Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework. IWBBIO (2013)
Matthew Kearse, Richard Moir, Amy Wilson, Steven Stones-Havas, Matthew Cheung, Shane S. Sturrock, Simon Buxton, Alex Cooper, Sidney Markowitz, Chris Duran, Tobias Thierer, Bruce Ashton, Peter L. Meintjes, Alexei J. Drummond
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinform. 28 (12) (2012)
Timothy G. Vaughan, Peter D. Drummond, Alexei J. Drummond
A retrodictive stochastic simulation algorithm. J. Comput. Phys. 229 (10) (2010)
Philippe Lemey, Andrew Rambaut, Alexei J. Drummond, Marc A. Suchard
Bayesian Phylogeography Finds Its Roots. PLoS Comput. Biol. 5 (9) (2009)
Sebastian Höhna, Michael Defoin-Platel, Alexei J. Drummond
Clock-constrained tree proposal operators in Bayesian phylogenetic inference. BIBE (2008)
Philippe Lemey, Sergei L. Kosakovsky Pond, Alexei J. Drummond, Oliver G. Pybus, Beth Shapiro, Helena Barroso, Nuno Taveira, Andrew Rambaut
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics. PLoS Comput. Biol. 3 (2) (2007)
Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein
Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinform. 6 (2005)
Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo
A Brief Introduction to the Phylogentics Analysis Library V1.5. APBC (2004)
Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. WABI (2003)
Alexei J. Drummond, Korbinian Strimmer
PAL: an object-oriented programming library for molecular evolution and phylogenetics. Bioinform. 17 (7) (2001)