Tanja Stadler

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 11

Top Topics

Top Venues

PLoS Comput. Biol.

Publications

Chaoran Chen, Alexander Taepper, Fabian Engelniederhammer, Jonas Kellerer, Cornelius Roemer, Tanja Stadler
LAPIS is a fast web API for massive open virus sequencing data. BMC Bioinform. 24 (1) (2023)
Jérémie Scire, Jana S. Huisman, Ana Grosu, Daniel C. Angst, Adrian Lison, Jinzhou Li, Marloes H. Maathuis, Sebastian Bonhoeffer, Tanja Stadler
estimateR: an R package to estimate and monitor the effective reproductive number. BMC Bioinform. 24 (1) (2023)
Chaoran Chen, Tanja Stadler
GenSpectrum Chat: Data Exploration in Public Health Using Large Language Models. CoRR (2023)
Elisabeth K. Brockhaus, Daniel Wolffram, Tanja Stadler, Michael Osthege, Tanmay Mitra, Jonas M. Littek, Ekaterina A. Krymova, Anna J. Klesen, Jana S. Huisman, Stefan Heyder, Laura Marie Helleckes, Matthias an der Heiden, Sebastian Funk, Sam Abbott, Johannes Bracher
Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany. PLoS Comput. Biol. 19 (11) (2023)
Chaoran Chen, Sarah Nadeau, Michael Yared, Philippe Voinov, Ning Xie, Cornelius Roemer, Tanja Stadler
CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants. Bioinform. 38 (6) (2022)
Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherrat, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Correction: Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput. Biol. 17 (12) (2021)
Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput. Biol. 16 (12) (2020)
Remco R. Bouckaert, Timothy G. Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K. Mendes, Nicola F. Müller, Huw A. Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni, Marc A. Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J. Drummond
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 15 (4) (2019)
Nicola F. Müller, David A. Rasmussen, Tanja Stadler
MASCOT: parameter and state inference under the marginal structured coalescent approximation. Bioinform. 34 (22) (2018)
David A. Rasmussen, Roger D. Kouyos, Huldrych F. Günthard, Tanja Stadler
Phylodynamics on local sexual contact networks. PLoS Comput. Biol. 13 (3) (2017)
Alexander Yermanos, Victor Greiff, Nike Julia Krautler, Ulrike Menzel, Andreas Dounas, Enkelejda Miho, Annette Oxenius, Tanja Stadler, Sai T. Reddy
Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim). Bioinform. 33 (24) (2017)
Alexandra Gavryushkina, David Welch, Tanja Stadler, Alexei J. Drummond
Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration. PLoS Comput. Biol. 10 (12) (2014)
Veronika Boskova, Sebastian Bonhoeffer, Tanja Stadler
Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models. PLoS Comput. Biol. 10 (11) (2014)
James H. Degnan, Noah A. Rosenberg, Tanja Stadler
A Characterization of the Set of Species Trees that Produce Anomalous Ranked Gene Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Gabriel E. Leventhal, Roger D. Kouyos, Tanja Stadler, Viktor von Wyl, Sabine Yerly, Jürg Böni, Cristina Cellerai, Thomas Klimkait, Huldrych F. Günthard, Sebastian Bonhoeffer
Inferring Epidemic Contact Structure from Phylogenetic Trees. PLoS Comput. Biol. 8 (3) (2012)
Tanja Stadler, James H. Degnan
A polynomial time algorithm for calculating the probability of a ranked gene tree given a species tree. Algorithms Mol. Biol. 7 (2012)