Sebastian Bonhoeffer

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 14

Top Topics

Clustering Result

Mathematical Models

Top Venues

PLoS Comput. Biol.

Publications

Jérémie Scire, Jana S. Huisman, Ana Grosu, Daniel C. Angst, Adrian Lison, Jinzhou Li, Marloes H. Maathuis, Sebastian Bonhoeffer, Tanja Stadler
estimateR: an R package to estimate and monitor the effective reproductive number. BMC Bioinform. 24 (1) (2023)
Hélène Chabas, Viktor Müller, Sebastian Bonhoeffer, Roland R. Regoes
Epidemiological and evolutionary consequences of different types of CRISPR-Cas systems. PLoS Comput. Biol. 18 (7) (2022)
Judith A. Bouman, Julien Riou, Sebastian Bonhoeffer, Roland R. Regoes
Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches. PLoS Comput. Biol. 17 (2) (2021)
Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherrat, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Correction: Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput. Biol. 17 (12) (2021)
Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput. Biol. 16 (12) (2020)
Jonas I. Liechti, Sebastian Bonhoeffer
A time resolved clustering method revealing longterm structures and their short-term internal dynamics. CoRR (2019)
Nathanaël Hozé, Sebastian Bonhoeffer, Roland Regoes
Assessing the public health impact of tolerance-based therapies with mathematical models. PLoS Comput. Biol. 14 (5) (2018)
Peter Ashcroft, Markus G. Manz, Sebastian Bonhoeffer
Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments. PLoS Comput. Biol. 13 (10) (2017)
Jonas Liechti, Gabriel E. Leventhal, Sebastian Bonhoeffer
Host population structure impedes reversion to drug sensitivity after discontinuation of treatment. PLoS Comput. Biol. 13 (8) (2017)
Thomas O. Richardson, Jonas Liechti, Nathalie Stroeymeyt, Sebastian Bonhoeffer, Laurent Keller
Short-term activity cycles impede information transmission in ant colonies. PLoS Comput. Biol. 13 (5) (2017)
Burcu Tepekule, Hildegard Uecker, Isabel Derungs, Antoine Frénoy, Sebastian Bonhoeffer
Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies. PLoS Comput. Biol. 13 (9) (2017)
Dominique Cadosch, Pia Abel zur Wiesch, Roger D. Kouyos, Sebastian Bonhoeffer
Emergence of MDR-TB. PLoS Comput. Biol. 12 (3) (2016)
Feng Fu, Martin A. Nowak, Sebastian Bonhoeffer
Spatial Heterogeneity in Drug Concentrations Can Facilitate the Emergence of Resistance to Cancer Therapy. PLoS Comput. Biol. 11 (3) (2015)
Ruth Nussinov, Sebastian Bonhoeffer, Jason A. Papin, Olaf Sporns
From "What Is?" to "What Isn't?" Computational Biology. PLoS Comput. Biol. 11 (7) (2015)
Veronika Boskova, Sebastian Bonhoeffer, Tanja Stadler
Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models. PLoS Comput. Biol. 10 (11) (2014)
Rafal Mostowy, Roger D. Kouyos, Ilka Hoof, Trevor Hinkley, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Can Kesmir, Sebastian Bonhoeffer
Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase. PLoS Comput. Biol. 8 (5) (2012)
Gabriel E. Leventhal, Roger D. Kouyos, Tanja Stadler, Viktor von Wyl, Sabine Yerly, Jürg Böni, Cristina Cellerai, Thomas Klimkait, Huldrych F. Günthard, Sebastian Bonhoeffer
Inferring Epidemic Contact Structure from Phylogenetic Trees. PLoS Comput. Biol. 8 (3) (2012)
Markus Arnoldini, Rafal Mostowy, Sebastian Bonhoeffer, Martin Ackermann
Evolution of Stress Response in the Face of Unreliable Environmental Signals. PLoS Comput. Biol. 8 (8) (2012)
Roger D. Kouyos, Pia Abel zur Wiesch, Sebastian Bonhoeffer
Informed Switching Strongly Decreases the Prevalence of Antibiotic Resistance in Hospital Wards. PLoS Comput. Biol. 7 (3) (2011)
João Martins, Roger D. Kouyos, Trevor Hinkley, Colombe Chappey, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Sebastian Bonhoeffer
Evolution of Recombination on an HIV-1 Derived Fitness Landscape. ALIFE (2010)
Jan Engelstädter, Sebastian Bonhoeffer
Red Queen Dynamics with Non-Standard Fitness Interactions. PLoS Comput. Biol. 5 (8) (2009)
Dusan Misevic, Roger D. Kouyos, Sebastian Bonhoeffer
Predicting the Evolution of Sex on Complex Fitness Landscapes. PLoS Comput. Biol. 5 (9) (2009)
Almut Scherer, Marcel Salathé, Sebastian Bonhoeffer
High Epitope Expression Levels Increase Competition between T Cells. PLoS Comput. Biol. 2 (8) (2006)
Robert M. May, Sebastian Bonhoeffer, Martin A. Nowak
Spatial Games and Evolution of Cooperation. ECAL (1995)