James H. Degnan

Publication Activity (10 Years)

Years Active: 2012-2022
Publications (10 Years): 3

Top Topics

Genomic Sequences

Inference Mechanism

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

Publications

Gleb Zhelezov, James H. Degnan
. Bioinform. 38 (14) (2022)
Anastasiia Kim, James H. Degnan
PRANC: ML species tree estimation from the ranked gene trees under coalescence. Bioinform. 36 (18) (2020)
Elizabeth S. Allman, James H. Degnan, John A. Rhodes
Species Tree Inference from Gene Splits by Unrooted STAR Methods. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (1) (2018)
Sha Zhu, James H. Degnan, Sharyn Goldstien, Bjarki Eldon
Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees. BMC Bioinform. 16 (2015)
James H. Degnan
Evaluating Variations on the STAR Algorithm for Relative Efficiency and Sample Sizes Needed to Reconstruct Species Trees. Pacific Symposium on Biocomputing (2013)
Elizabeth S. Allman, James H. Degnan, John A. Rhodes
Species Tree Inference by the STAR Method and Its Generalizations. J. Comput. Biol. 20 (1) (2013)
James H. Degnan, Noah A. Rosenberg, Tanja Stadler
A Characterization of the Set of Species Trees that Produce Anomalous Ranked Gene Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Tanja Stadler, James H. Degnan
A polynomial time algorithm for calculating the probability of a ranked gene tree given a species tree. Algorithms Mol. Biol. 7 (2012)