John A. Rhodes

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 11

Top Topics

Dirichlet Distribution

Summary Statistics

Genomic Sequences

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

SIAM J. Appl. Algebra Geom.

Publications

Elizabeth S. Allman, Colby Long, John A. Rhodes
Phylogenomic Models from Tree Symmetries. SIAM J. Appl. Algebra Geom. 8 (1) (2024)
Elizabeth S. Allman, Hector Baños, John A. Rhodes
Testing Multispecies Coalescent Simulators Using Summary Statistics. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Elizabeth Gross, John A. Rhodes
Inferring Phylogenetic Networks Using Algebraic Geometry. XRDS 30 (2) (2023)
Dakota Dragomir, Elizabeth S. Allman, John A. Rhodes
Parameter Identifiability of a Multitype Pure-Birth Model of Speciation. J. Comput. Biol. 30 (3) (2023)
John A. Rhodes, Hector Baños, Jonathan D. Mitchell, Elizabeth S. Allman
MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R. Bioinform. 37 (12) (2021)
Samaneh Yourdkhani, Elizabeth S. Allman, John A. Rhodes
Parameter Identifiability for a Profile Mixture Model of Protein Evolution. J. Comput. Biol. 28 (6) (2021)
John A. Rhodes
Topological Metrizations of Trees, and New Quartet Methods of Tree Inference. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (6) (2020)
Elizabeth S. Allman, Colby Long, John A. Rhodes
Species Tree Inference from Genomic Sequences Using the Log-Det Distance. SIAM J. Appl. Algebra Geom. 3 (1) (2019)
Elizabeth S. Allman, Hector Baños, John A. Rhodes
NANUQ: a method for inferring species networks from gene trees under the coalescent model. Algorithms Mol. Biol. 14 (1) (2019)
Elizabeth S. Allman, James H. Degnan, John A. Rhodes
Species Tree Inference from Gene Splits by Unrooted STAR Methods. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (1) (2018)
Elizabeth S. Allman, John A. Rhodes, Seth Sullivant
-mer Methods for Phylogenetic Tree Reconstruction. J. Comput. Biol. 24 (2) (2017)
Elizabeth S. Allman, John A. Rhodes, Amelia Taylor
A Semialgebraic Description of the General Markov Model on Phylogenetic Trees. SIAM J. Discret. Math. 28 (2) (2014)
Elizabeth S. Allman, Peter D. Jarvis, John A. Rhodes, Jeremy G. Sumner
Tensor Rank, Invariants, Inequalities, and Applications. SIAM J. Matrix Anal. Appl. 34 (3) (2013)
Elizabeth S. Allman, James H. Degnan, John A. Rhodes
Species Tree Inference by the STAR Method and Its Generalizations. J. Comput. Biol. 20 (1) (2013)
Elizabeth S. Allman, Sonja Petrovic, John A. Rhodes, Seth Sullivant
Identifiability of Two-Tree Mixtures for Group-Based Models. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (3) (2011)
Elizabeth S. Allman, John A. Rhodes
The Identifiability of Covarion Models in Phylogenetics. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (1) (2009)
Elizabeth S. Allman, John A. Rhodes
Phylogenetic ideals and varieties for the general Markov model. Adv. Appl. Math. 40 (2) (2008)
Elizabeth S. Allman, John A. Rhodes
Phylogenetic invariants for stationary base composition. J. Symb. Comput. 41 (2) (2006)
Elizabeth S. Allman, John A. Rhodes
The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models. J. Comput. Biol. 13 (5) (2006)