Anne-Mieke Vandamme

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 4

Top Topics

High Throughput Sequencing

Population Dynamics

Top Venues

PLoS Comput. Biol.

Publications

Giulia Di Teodoro, Federico Siciliano, Valerio Guarrasi, Anne-Mieke Vandamme, Valeria Ghisetti, Anders Sönnerborg, Maurizio Zazzi, Fabrizio Silvestri, Laura Palagi
A graph neural network-based model with Out-of-Distribution Robustness for enhancing Antiretroviral Therapy Outcome Prediction for HIV-1. CoRR (2023)
Kristof Decock, Koenraad Debackere, Anne-Mieke Vandamme, Bart Van Looy
Scenario-driven forecasting: modeling peaks and paths. Insights from the COVID-19 pandemic in Belgium. Scientometrics 124 (3) (2020)
Michael Vilsker, Yumna Moosa, Sam Nooij, Vagner Fonseca, Yoika Ghysens, Korneel Dumon, Raf Pauwels, Luiz Carlos Alcantara, Ewout Vanden Eynden, Anne-Mieke Vandamme, Koen Deforche, Tulio de Oliveira
Genome Detective: an automated system for virus identification from high-throughput sequencing data. Bioinform. 35 (5) (2019)
Pieter Libin, Ewout Vanden Eynden, Francesca Incardona, Ann Nowé, Antonia Bezenchek, EucoHIV Study Group, Anders Sönnerborg, Anne-Mieke Vandamme, Kristof Theys, Guy Baele
PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context. Bioinform. 33 (24) (2017)
Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates. PLoS Comput. Biol. 10 (4) (2014)
Pieter Libin, Gertjan Beheydt, Koen Deforche, Stijn Imbrechts, Fossie Ferreira, Kristel Van Laethem, Kristof Theys, Ana Patricia Carvalho, Joana Cavaco-Silva, Giuseppe Lapadula, Carlo Torti, Matthias Assel, Stefan Wesner, Joke Snoeck, Jean Ruelle, Annelies De Bel, Patrick Lacor, Paul De Munter, Eric Van Wijngaerden, Maurizio Zazzi, Rolf Kaiser, Ahidjo Ayouba, Martine Peeters, Tulio de Oliveira, Luiz Carlos Junior Alcantara, Zehava Grossman, Peter M. A. Sloot, Dan Otelea, Simona Paraschiv, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme
RegaDB: community-driven data management and analysis for infectious diseases. Bioinform. 29 (11) (2013)
Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey
Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework. IWBBIO (2013)
Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel Van Laethem, Philippe Lemey, Ricardo Camacho, Soo-Yon Rhee, Robert W. Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape. BMC Bioinform. 11 (2010)
Luiz Carlos Junior Alcantara, Sharon Cassol, Pieter Libin, Koen Deforche, Oliver G. Pybus, Marc Van Ranst, Bernardo Galvão-Castro, Anne-Mieke Vandamme, Tulio de Oliveira
A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Matthias Assel, David A. van de Vijver, Pieter Libin, Kristof Theys, Daniel Harezlak, Breanndán Ó Nualláin, Piotr Nowakowski, Marian Bubak, Anne-Mieke Vandamme, Stijn Imbrechts, Raphael Sangeda, Tao Jiang, Dineke Frentz, Peter M. A. Sloot
A Collaborative Environment Allowing Clinical Investigations on Integrated Biomedical Databases. HealthGrid (2009)
Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Philippe Lemey, Andrew Rambaut, Yves Moreau, Anne-Mieke Vandamme
fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment. Bioinform. 24 (1) (2008)
Peter M. A. Sloot, Peter V. Coveney, Marian Bubak, Anne-Mieke Vandamme, Breanndán Ó Nualláin, David A. van de Vijver, Charles A. Boucher
Multi-Science Decision Support for HIV Drug Resistance Treatment. HealthGrid (2008)
Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Beth Shapiro, Yves Moreau, Andrew Rambaut, Anne-Mieke Vandamme, Philippe Lemey
. J. Comput. Biol. 14 (8) (2007)
Koen Deforche, Tomi Silander, Ricardo Camacho, Zehava Grossman, M. A. Soares, Kristel Van Laethem, Rami Kantor, Yves Moreau, Anne-Mieke Vandamme
sequences using Bayesian Networks: implications for drug resistance. Bioinform. 22 (24) (2006)
Tulio de Oliveira, Koen Deforche, Sharon Cassol, Mika Salminen, Dimitris Paraskevis, Chris Seebregts, Joke Snoeck, Estrelita J. Janse van Rensburg, Annemarie M. J. Wensing, David A. van de Vijver, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme
An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinform. 21 (19) (2005)
Dimitris Paraskevis, Koen Deforche, Philippe Lemey, Gkikas Magiorkinis, Angelos Hatzakis, Anne-Mieke Vandamme
SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference. Bioinform. 21 (7) (2005)