Raunaq Malhotra

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 4

Top Topics

Statistical Analyses

Single Nucleotide Polymorphisms

Hierarchical Clustering

Error Correction

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Weiling Li, Raunaq Malhotra, Steven H. Wu, Manjari Jha, Allen G. Rodrigo, Mary Poss, Raj Acharya
ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (3) (2024)
Weiling Li, Lin Lin, Raunaq Malhotra, Lei Yang, Raj Acharya, Mary Poss
A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations. PLoS Comput. Biol. 15 (3) (2019)
Xavier Bofill-De Ros, Kevin Chen, Susanna Chen, Nikola Tesic, Dusan Randjelovic, Nikola Skundric, Svetozar Nesic, Vojislav Varjacic, Elizabeth H. Williams, Raunaq Malhotra, Minjie Jiang, Shuo Gu
QuagmiR: a cloud-based application for isomiR big data analytics. Bioinform. 35 (9) (2019)
Manjari Jha, Raunaq Malhotra, Raj Acharya
A Generalized Lattice Based Probabilistic Approach for Metagenomic Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (4) (2017)
Yang Liu, Francesca Chiaromonte, Howard Ross, Raunaq Malhotra, Daniel Elleder, Mary Poss
Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data. BMC Bioinform. 16 (2015)
Manjari Mukhopadhyay, Raunaq Malhotra, Raj Acharya
A generalized lattice model for clustering metagenomic sequences. BCB (2015)
Le Bao, Daniel Elleder, Raunaq Malhotra, Michael DeGiorgio, Theodora Maravegias, Lindsay Horvath, Laura Carrel, Colin Gillin, Tomás Hron, Helena Fábryová, David R. Hunter, Mary Poss
Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism. Comput. 2 (4) (2014)
Shruthi Prabhakara, Raunaq Malhotra, Raj Acharya, Mary Poss
Mutant-Bin: Unsupervised Haplotype Estimation of Viral Population Diversity Without Reference Genome. J. Comput. Biol. 20 (6) (2013)
Raunaq Malhotra, Shruthi Prabhakara, Mary Poss, Raj Acharya
Estimating Viral Haplotypes in a Population Using k-mer Counting. PRIB (2013)
Raunaq Malhotra, Shruthi Prabhakara, Raj Acharya
Predicting V(D)J Recombination Using Conditional Random Fields. PRIB (2012)