Kevin Y. Yip

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 12

Top Topics

Mass Spectrometry Data

Rna Secondary Structures

Gene Regulatory

Software Package

Top Venues

Briefings Bioinform.

Nat. Mach. Intell.

Publications

Chenyang Hong, Qin Cao, Zhenghao Zhang, Stephen Kwok-Wing Tsui, Kevin Y. Yip
Reusability report: Capturing properties of biological objects and their relationships using graph neural networks. Nat. Mach. Intell. 4 (3) (2022)
Yu Li, Siyuan Chen, Trisevgeni Rapakoulia, Hiroyuki Kuwahara, Kevin Y. Yip, Xin Gao
Deep learning identifies and quantifies recombination hotspot determinants. Bioinform. 38 (10) (2022)
Chenyang Hong, Kevin Y. Yip
Flexible k-mers with variable-length indels for identifying binding sequences of protein dimers. Briefings Bioinform. 21 (5) (2020)
Edwin Yu-Kiu Ho, Qin Cao, Mengting Gu, Ricky Wai-Lun Chan, Qiong Wu, Mark Gerstein, Kevin Y. Yip
Shaping the nebulous enhancer in the era of high-throughput assays and genome editing. Briefings Bioinform. 21 (3) (2020)
Qin Cao, Zhenghao Zhang, Alexander Xi Fu, Qiong Wu, Tin-Lap Lee, Eric Lo, Alfred S. L. Cheng, Chao Cheng, Danny Leung, Kevin Y. Yip
A unified framework for integrative study of heterogeneous gene regulatory mechanisms. Nat. Mach. Intell. 2 (8) (2020)
Andrew Ching-Yuet To, David Ho-Ting Chu, Angela Ruoning Wang, Frances Cheuk-Yau Li, Alan Wai-On Chiu, Daisy Yuwei Gao, Chung Hang Jonathan Choi, Siu-Kai Kong, Ting-Fung Chan, King-Ming Chan, Kevin Y. Yip
A comprehensive web tool for toehold switch design. Bioinform. 34 (16) (2018)
Danny Kit-Sang Yip, Landon L. Chan, Iris K. Pang, Wei Jiang, Nelson L. S. Tang, Weichuan Yu, Kevin Y. Yip
A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility. Bioinform. 34 (10) (2018)
Alden King-Yung Leung, Nana Jin, Kevin Y. Yip, Ting-Fung Chan
OMTools: a software package for visualizing and processing optical mapping data. Bioinform. 33 (18) (2017)
Alden King-Yung Leung, Tsz-Piu Kwok, Raymond Wan, Ming Xiao, Pui-Yan Kwok, Kevin Y. Yip, Ting-Fung Chan
OMBlast: alignment tool for optical mapping using a seed-and-extend approach. Bioinform. 33 (3) (2017)
Xihao Hu, Christina Huan Shi, Kevin Y. Yip
A novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps. Bioinform. 32 (12) (2016)
Xihao Hu, Yang Wu, Zhi John Lu, Kevin Y. Yip
Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations. Briefings Bioinform. 17 (6) (2016)
Menglu Li, Angel C. Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Ming Xiao, Kevin Y. Yip, Ting-Fung Chan, Siu-Ming Yiu
Towards a More Accurate Error Model for BioNano Optical Maps. ISBRA (2016)
Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. Bioinform. 30 (8) (2014)
Alex Chun-Hong Fok, Sunny Siu-Nam Mok, Sau Dan Lee, Kevin Y. Yip
ECplot: an online tool for making standardized plots from large datasets for bioinformatics publications. Bioinform. 30 (10) (2014)
Kevin Y. Yip, Ben Kao, Xinjie Zhu, Chun Kit Chui, Sau Dan Lee, David W. Cheung
Mining Order-Preserving Submatrices from Data with Repeated Measurements. IEEE Trans. Knowl. Data Eng. 25 (7) (2013)
Wang Kay Ngai, Ben Kao, Reynold Cheng, Michael Chau, Sau Dan Lee, David W. Cheung, Kevin Y. Yip
Metric and trigonometric pruning for clustering of uncertain data in 2D geometric space. Inf. Syst. 36 (2) (2011)
Justin Jee, Joel S. Rozowsky, Kevin Y. Yip, Lucas Lochovsky, Robert D. Bjornson, Guoneng Zhong, Zhengdong D. Zhang, Yutao Fu, Jie Wang, Zhiping Weng, Mark Gerstein
ACT: aggregation and correlation toolbox for analyses of genome tracks. Bioinform. 27 (8) (2011)
Smith Tsang, Ben Kao, Kevin Y. Yip, Wai-Shing Ho, Sau Dan Lee
Decision Trees for Uncertain Data. IEEE Trans. Knowl. Data Eng. 23 (1) (2011)
Kevin Y. Yip, Mark Gerstein
Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions. Bioinform. 25 (2) (2009)
Kevin Y. Yip, Philip M. Kim, Drew McDermott, Mark Gerstein
Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels. BMC Bioinform. 10 (2009)
Kevin Y. Yip, Lin Cheung, David W. Cheung, Liping Jing, Michael K. Ng
A semi-supervised approach to projected clustering with applications to microarray data. Int. J. Data Min. Bioinform. 3 (3) (2009)
Smith Tsang, Ben Kao, Kevin Y. Yip, Wai-Shing Ho, Sau Dan Lee
Decision Trees for Uncertain Data. ICDE (2009)
Kevin Y. Yip, Prianka Patel, Philip M. Kim, Donald M. Engelman, Drew McDermott, Mark Gerstein
An integrated system for studying residue coevolution in proteins. Bioinform. 24 (2) (2008)
Songhua Xu, Suchao Chen, Kevin Y. Yip, Francis C. M. Lau, Xueying Qin
A Two-Stage Audio Retrieval Method for Searching Unannotated Audio Clips. ISM (2008)
Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. J. Am. Medical Informatics Assoc. 15 (6) (2008)
Chun Kit Chui, Ben Kao, Kevin Y. Yip, Sau Dan Lee
Mining Order-Preserving Submatrices from Data with Repeated Measurements. ICDM (2008)
Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. J. Biomed. Informatics 41 (5) (2008)
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinform. 8 (S-3) (2007)
Lin Cheung, David W. Cheung, Ben Kao, Kevin Y. Yip, Michael K. Ng
On mining micro-array data by Order-Preserving Submatrix. Int. J. Bioinform. Res. Appl. 3 (1) (2007)
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 23 (8) (2007)
Minghua Zhang, Ben Kao, David W. Cheung, Kevin Y. Yip
Mining periodic patterns with gap requirement from sequences. ACM Trans. Knowl. Discov. Data 1 (2) (2007)
Wang Kay Ngai, Ben Kao, Chun Kit Chui, Reynold Cheng, Michael Chau, Kevin Y. Yip
Efficient Clustering of Uncertain Data. ICDM (2006)
Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung
SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services. Pacific Symposium on Biocomputing (2006)
Kevin Y. Yip, Michael K. Ng, David W. Cheung
Input Validation for Semi-supervised Clustering. ICDM Workshops (2006)
Eric Lo, Kevin Y. Yip, King-Ip Lin, David W. Cheung
Progressive skylining over Web-accessible databases. Data Knowl. Eng. 57 (2) (2006)
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 22 (23) (2006)
Sio Iong Ao, Kevin Y. Yip, Michael K. Ng, David Wai-Lok Cheung, Pui-Yee Fong, Ian Melhado, Pak Chung Sham
CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs. Bioinform. 21 (8) (2005)
Lin Cheung, Kevin Y. Yip, David W. Cheung, Ben Kao, Michael K. Ng
On Mining Micro-array data by Order-Preserving Submatrix. ICDE Workshops (2005)
Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein
YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) (2005)
Kevin Y. Yip, David W. Cheung, Michael K. Ng
On Discovery of Extremely Low-Dimensional Clusters using Semi-Supervised Projected Clustering. ICDE (2005)
Minghua Zhang, Ben Kao, David Wai-Lok Cheung, Kevin Y. Yip
Mining Periodic Patterns with Gap Requirement from Sequences. SIGMOD Conference (2005)
Kevin Y. Yip, David W. Cheung, Michael K. Ng
HARP: A Practical Projected Clustering Algorithm. IEEE Trans. Knowl. Data Eng. 16 (11) (2004)
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
Identifying projected clusters from gene expression profiles. J. Biomed. Informatics 37 (5) (2004)
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
Identifying Projected Clusters from Gene Expression Profiles. BIBE (2004)
Remko de Knikker, Youjun Guo, Jin-long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung
A web services choreography scenario for interoperating bioinformatics applications. BMC Bioinform. 5 (2004)
Kevin Y. Yip, David W. Cheung, Michael K. Ng
A highly-usable projected clustering algorithm for gene expression profiles. BIOKDD (2003)