Flexible k-mers with variable-length indels for identifying binding sequences of protein dimers.

Chenyang Hong Kevin Y. Yip

Published in: Briefings Bioinform. (2020)

Keyphrases

variable length
sequence alignment
fixed length
dna binding
n gram
protein sequences
amino acids
bitstream
pairwise
dynamic programming
statistical dependencies
three dimensional
protein structure
text compression
sequence analysis
sequence databases
hidden markov models
multiscale