Joel S. Rozowsky

Publication Activity (10 Years)

Years Active: 2005-2018
Publications (10 Years): 1

Top Topics

Cloud Computing Environment

Comparative Analysis

Top Venues

PLoS Comput. Biol.

Publications

Karolina Elzbieta Kaczor-Urbanowicz, Yong Kim, Feng Li, Timur Galeev, Robert R. Kitchen, Mark Gerstein, Kikuye Koyano, Sung-Hee Jeong, Xiaoyan Wang, David Elashoff, So Young Kang, Su Mi Kim, Kyoung Kim, Sung Kim, David Chia, Xinshu Xiao, Joel S. Rozowsky, David T. W. Wong
Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development. Bioinform. 34 (1) (2018)
Daifeng Wang, Koon-Kiu Yan, Cristina Sisu, Chao Cheng, Joel S. Rozowsky, William Meyerson, Mark B. Gerstein
Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors. PLoS Comput. Biol. 11 (4) (2015)
Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana W. Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel S. Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder
Comparative analysis of regulatory information and circuits across distant species Open. Nat. 512 (7515) (2014)
Lukas Habegger, Suganthi Balasubramanian, David Z. Chen, Ekta Khurana, Andrea Sboner, Arif O. Harmanci, Joel S. Rozowsky, Declan Clarke, Michael Snyder, Mark Gerstein
VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment. Bioinform. 28 (17) (2012)
Alexander Karpikov, Joel S. Rozowsky, Mark Gerstein
Tiling array data analysis: a multiscale approach using wavelets. BMC Bioinform. 12 (2011)
Justin Jee, Joel S. Rozowsky, Kevin Y. Yip, Lucas Lochovsky, Robert D. Bjornson, Guoneng Zhong, Zhengdong D. Zhang, Yutao Fu, Jie Wang, Zhiping Weng, Mark Gerstein
ACT: aggregation and correlation toolbox for analyses of genome tracks. Bioinform. 27 (8) (2011)
Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein
Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. PLoS Comput. Biol. 7 (11) (2011)
Lukas Habegger, Andrea Sboner, Tara A. Gianoulis, Joel S. Rozowsky, Ashish Agarwal, Michael Snyder, Mark Gerstein
RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. Bioinform. 27 (2) (2011)
Zhengdong D. Zhang, Joel S. Rozowsky, Michael Snyder, Joseph T. Chang, Mark Gerstein
Modeling ChIP Sequencing In Silico with Applications. PLoS Comput. Biol. 4 (8) (2008)
Thomas E. Royce, Joel S. Rozowsky, Mark Gerstein
Assessing the need for sequence-based normalization in tiling microarray experiments. Bioinform. 23 (8) (2007)
Jiang Du, Joel S. Rozowsky, Jan O. Korbel, Zhengdong D. Zhang, Thomas E. Royce, Martin H. Schultz, Michael Snyder, Mark Gerstein
A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge. Bioinform. 22 (24) (2006)
Joel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder, Mark Gerstein
Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites. BSB (2005)