Haiyuan Yu

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 10

Top Topics

Poisson Equation

Pharmaceutical Industry

Error Estimates

Class Imbalance

Top Venues

Appl. Math. Comput.

Comput. Math. Appl.

PLoS Comput. Biol.

Publications

Cunyun Nie, Haiyuan Yu
A monotone finite volume element scheme for diffusion equations on triangular grids. Comput. Math. Appl. 105 (2022)
Yingying Zhang, Shayne D. Wierbowski, Haiyuan Yu
Combining views for newly sequenced organisms. Nat. Mach. Intell. 3 (12) (2021)
Gen Li, Swagata Pahari, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu, Emil Alexov
SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinity. Bioinform. 37 (7) (2021)
Chunsheng Feng, Cunyun Nie, Haiyuan Yu, Liping Zhou, Karthikeyan Rajagopal
A Difference Scheme and Its Error Analysis for a Poisson Equation with Nonlocal Boundary Conditions. Complex. 2020 (2020)
Siqi Liang, Haiyuan Yu, Jonathan D. Wren
Revealing new therapeutic opportunities through drug target prediction: a class imbalance-tolerant machine learning approach. Bioinform. 36 (16) (2020)
Sheng Qian, Siqi Liang, Haiyuan Yu
Leveraging genetic interactions for adverse drug-drug interaction prediction. PLoS Comput. Biol. 15 (5) (2019)
Siwei Chen, Juan F. Beltrán, Clara Esteban-Jurado, Sebastià Franch-Expósito, Sergi Castellví-Bel, Steven Lipkin, Xiaomu Wei, Haiyuan Yu
GeMSTONE: orchestrated prioritization of human germline mutations in the cloud. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Cunyun Nie, Shi Shu, Haiyuan Yu, Wenhua Xia
Superconvergence and asymptotic expansions for bilinear finite volume element approximation on non-uniform grids. J. Comput. Appl. Math. 321 (2017)
Jie Peng, Shi Shu, Haiyuan Yu, Chunsheng Feng, Mingxian Kan, Ganghua Wang
Error estimates on a finite volume method for diffusion problems with interface on rectangular grids. Appl. Math. Comput. 311 (2017)
Michael J. Meyer, Philip Geske, Haiyuan Yu
BISQUE: locus- and variant-specific conversion of genomic, transcriptomic and proteomic database identifiers. Bioinform. 32 (10) (2016)
Cunyun Nie, Haiyuan Yu
Some error estimates on the large jump asymptotic approach for the interface problem. Appl. Math. Comput. 263 (2015)
Cunyun Nie, Shi Shu, Haiyuan Yu, Qianjiang An
A high order composite scheme for the second order elliptic problem with nonlocal boundary and its fast algorithm. Appl. Math. Comput. 227 (2014)
Xiujuan Wang, Bram Thijssen, Haiyuan Yu
Target Essentiality and Centrality Characterize Drug Side Effects. PLoS Comput. Biol. 9 (7) (2013)
Cunyun Nie, Shi Shu, Haiyuan Yu, Yuyue Yang
Superconvergence and asymptotic expansion for semidiscrete bilinear finite volume element approximation of the parabolic problem. Comput. Math. Appl. 66 (1) (2013)
Michael J. Meyer, Jishnu Das, Xiujuan Wang, Haiyuan Yu
INstruct: a database of high-quality 3D structurally resolved protein interactome networks. Bioinform. 29 (12) (2013)
Jishnu Das, Haiyuan Yu
HINT: High-quality protein interactomes and their applications in understanding human disease. BMC Syst. Biol. 6 (2012)
Jishnu Das, Jaaved Mohammed, Haiyuan Yu
Genome-scale analysis of interaction dynamics reveals organization of biological networks. Bioinform. 28 (14) (2012)
Haiyuan Yu, Philip M. Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein
The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics. PLoS Comput. Biol. 3 (4) (2007)
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 23 (8) (2007)
Haiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein
Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinform. 23 (16) (2007)
Shi Shu, Jinchao Xu, Ying Yang, Haiyuan Yu
An algebraic multigrid method for finite element systems on criss-cross grids. Adv. Comput. Math. 25 (1-3) (2006)
Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein
Predicting interactions in protein networks by completing defective cliques. Bioinform. 22 (7) (2006)
Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 22 (23) (2006)
Jiang Qian, C. Jimmy Lin, Nicholas M. Luscombe, Haiyuan Yu, Mark Gerstein
Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data. Bioinform. 19 (15) (2003)