Gustavo Stolovitzky

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 9

Top Topics

Practical Issues

Gene Expression

Systems Biology

Top Venues

J. Comput. Biol.

BMC Syst. Biol.

Publications

Magali Richard, Yuna Blum, Justin Guinney, Gustavo Stolovitzky, Adrien Pavão
AI Competitions and Benchmarks, Practical issues: Proposals, grant money, sponsors, prizes, dissemination, publicity. CoRR (2024)
Gustavo Stolovitzky, Julio Saez-Rodriguez, Julie Bletz, Jacob Albrecht, Gaia Andreoletti, James C. Costello, Paul C. Boutros
AI Competitions and Benchmarks: The life cycle of challenges and benchmarks. CoRR (2023)
Marco Ciccone, Gustavo Stolovitzky, Jacob Albrecht
NeurIPS 2022 Competition Track Revised Selected Papers. NeurIPS (Competition and Demos) (2021)
Mehmet Eren Ahsen, Yoojin Chun, Alexander Grishin, Galina Grishina, Gustavo Stolovitzky, Gaurav Pandey, Supinda Bunyavanich
NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers. BCB (2020)
Xintong Chen, Sander M. Houten, Kimaada Allette, Robert P. Sebra, Gustavo Stolovitzky, Bojan Losic
Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology. PSB (2018)
Mehmet Eren Ahsen, Robert M. Vogel, Gustavo Stolovitzky
Unsupervised Evaluation and Weighted Aggregation of Ranked Predictions. CoRR (2018)
Carla Agurto, Pat Pataranutaporn, Elif K. Eyigöz, Gustavo Stolovitzky, Guillermo A. Cecchi
Predictive Linguistic Markers of Suicidality in Poets. ICSC (2018)
David Noren, Byron Long, Raquel Norel, Kahn Rhrissorrakrai, Kenneth R. Hess, Chenyue W. Hu, Alex Bisberg, André Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M. Chen, Honglei Xie, Geoffrey A. M. Hunter, Paul C. Boutros, Oleg A. Stepanov, DREAM 9 AML-OPC Consortium, Thea Norman, Stephen H. Friend, Gustavo Stolovitzky, Steven M. Kornblau, Amina A. Qutub
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis. PLoS Comput. Biol. 12 (6) (2016)
Rob Patro, Raquel Norel, Robert J. Prill, Julio Saez-Rodriguez, Peter Lorenz, Felix Steinbeck, Bjoern Ziems, Mitja Lustrek, Nicola Barbarini, Alessandra Tiengo, Riccardo Bellazzi, Hans-Jürgen Thiesen, Gustavo Stolovitzky, Carl Kingsford
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. BMC Bioinform. 17 (2016)
Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng
Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. Bioinform. 31 (4) (2015)
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
DREAMTools: a Python package for scoring collaborative challenges. F1000Research 4 (2015)
Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin
A crowd-sourcing approach for the construction of species-specific cell signaling networks. Bioinform. 31 (4) (2015)
Andrea Califano, Manolis Kellis, Gustavo Stolovitzky
Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue. J. Comput. Biol. 22 (4) (2015)
Andrea Califano, Manolis Kellis, Gustavo Stolovitzky
RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue. J. Comput. Biol. 21 (5) (2014)
Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. BMC Syst. Biol. 8 (2014)
Pablo Meyer, Guillermo A. Cecchi, Gustavo Stolovitzky
Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria. BMC Syst. Biol. 8 (2014)
David Noren, Steven M. Kornblau, Chenyue W. Hu, Byron Long, Alex Bisberg, Raquel Norel, Gustavo Stolovitzky, Amina A. Qutub
DREAM 9: An Acute Myeloid Leukemia Prediction Big Data Challenge. ICBO (2014)
Andrea Califano, Manolis Kellis, Gustavo Stolovitzky
Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue. J. Comput. Biol. 20 (5) (2013)
Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinform. 29 (22) (2013)
Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky
Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinform. 28 (9) (2012)
Andrea Califano, Manolis Kellis, Gustavo Stolovitzky
Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue. J. Comput. Biol. 19 (2) (2012)
Peicheng Du, Gustavo Stolovitzky, Peter Horvatovich, Rainer Bischoff, Jihyeon Lim, Frank Suits
A noise model for mass spectrometry based proteomics. Bioinform. 24 (8) (2008)
John Wagner, Gustavo Stolovitzky
Stability and Time-Delay Modeling of Negative Feedback Loops. Proc. IEEE 96 (8) (2008)
Adam A. Margolin, Teresa Palomero, Adolfo A. Ferrando, Andrea Califano, Gustavo Stolovitzky
ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding. BMC Bioinform. 8 (S-8) (2007)
Haiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein
Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinform. 23 (16) (2007)
Adam A. Margolin, Ilya Nemenman, Katia Basso, Chris Wiggins, Gustavo Stolovitzky, Riccardo Dalla Favera, Andrea Califano
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context. BMC Bioinform. 7 (S-1) (2006)
Gabriela Alexe, Gyan Bhanot, Babu Venkataraghavan, Ramakrishna Ramaswamy, Jorge Lepre, Arnold J. Levine, Gustavo Stolovitzky
A Robust Meta-classification Strategy for Cancer Diagnosis from Gene Expression Data. CSB (2005)
John Jeremy Rice, Yuhai Tu, Gustavo Stolovitzky
Reconstructing biological networks using conditional correlation analysis. Bioinform. 21 (6) (2005)
Jorge Lepre, John Jeremy Rice, Yuhai Tu, Gustavo Stolovitzky
Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data. Bioinform. 20 (7) (2004)
Nigam Shah, Jorge Lepre, Yuhai Tu, Gustavo Stolovitzky
Can We Identify Cellular Pathways Implicated in Cancer Using Gene Expression Data? CSB (2003)
Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano
Systematic and automated discovery of patterns in PROSITE families. RECOMB (2000)
Andrea Califano, Gustavo Stolovitzky, Yuhai Tu
Analysis of Gene Expression Microarrays for Phenotype Classification. ISMB (2000)
Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano
Systematic and Fully Automated Identification of Protein Sequence Patterns. J. Comput. Biol. 7 (3-4) (2000)
Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustavo Stolovitzky, Yuan Gao
Sequence homology detection through large scale pattern discovery. RECOMB (1999)