Matthew T. Weirauch

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 1

Top Topics

Saccharomyces Cerevisiae

Gene Regulation

Component Analysis

Top Venues

Pacific Symposium on Biocomputing

PLoS Comput. Biol.

Publications

Tareian A. Cazares, Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar, Anthony T. Bejjani, Joseph A. Wayman, Omer Donmez, Benjamin Wronowski, Sreeja Parameswaran, Leah C. Kottyan, Artem Barski, Matthew T. Weirauch, V. B. Surya Prasath, Emily R. Miraldi
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. PLoS Comput. Biol. 19 (1) (2023)
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
DREAMTools: a Python package for scoring collaborative challenges. F1000Research 4 (2015)
Sumit B. Makashir, Leah C. Kottyan, Matthew T. Weirauch
Meta-Analysis of Differential Gene Co-Expression: Application to Lupus. Pacific Symposium on Biocomputing (2015)
Debashish Ray, Hilal Kazan, Kate B. Cook, Matthew T. Weirauch, Hamed S. Najafabadi, Xiao Li, Serge Gueroussov, Mihai Albu, Hong Zheng, Ally Yang, Hong Na, Manuel Irimia, Leah H. Matzat, Ryan K. Dale, Sarah A. Smith, Christopher A. Yarosh, Seth M. Kelly, Behnam Nabet, Desirea Mecenas, Weimin Li, Rakesh S. Laishram, Mei Qiao, Howard D. Lipshitz, Fabio Piano, Anita H. Corbett, Russ P. Carstens, Brendan J. Frey, Richard A. Anderson, Kristen W. Lynch, Luiz O. F. Penalva, Elissa P. Lei, Andrew G. Fraser, Benjamin J. Blencowe, Quaid Morris, Timothy R. Hughes
A compendium of RNA-binding motifs for decoding gene regulation. Nat. 499 (7457) (2013)
Matthew T. Weirauch, Christopher K. Wong, Alexandra B. Byrne, Joshua M. Stuart
Information-based methods for predicting gene function from systematic gene knock-downs. BMC Bioinform. 9 (2008)
George E. Liu, Matthew T. Weirauch, Curtis P. Van Tassell, Robert W. Li, Tad S. Sonstegard, Lakshmi K. Matukumalli, Erin E. Connor, Richard W. Hanson, Jianqi Yang
Identification of Conserved Regulatory Elements in Mammalian Promoter Regions: A Case Study Using the PCK1 Promoter. Genom. Proteom. Bioinform. 6 (3-4) (2008)
Chunnuan Chen, Matthew T. Weirauch, Corey Powell, Alexander C. Zambon, Joshua M. Stuart
A search engine to identify pathway genes from expression data on multiple organisms. BMC Syst. Biol. 1 (2007)
Firas Khatib, Matthew T. Weirauch, Carol A. Rohl
Rapid knot detection and application to protein structure prediction. ISMB (Supplement of Bioinformatics) (2006)
Matthew T. Weirauch, Joshua M. Stuart
Discovering Functional Transcription Factor Binding from Superimposed Gene Networks. CSB Workshops (2005)