Hilal Kazan

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 9

Top Topics

High Throughput

Matrix Factorization

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Ibrahim Berber, Cesim Erten, Hilal Kazan
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Cesim Erten, Aissa Houdjedj, Hilal Kazan, Ahmed Amine Taleb Bahmed
PersonaDrive: a method for the identification and prioritization of personalized cancer drivers. Bioinform. 38 (13) (2022)
Amra Omanovic, Hilal Kazan, Polona Oblak, Tomaz Curk
Sparse data embedding and prediction by tropical matrix factorization. BMC Bioinform. 22 (1) (2021)
Cesim Erten, Aissa Houdjedj, Hilal Kazan
Ranking cancer drivers via betweenness-based outlier detection and random walks. BMC Bioinform. 22 (1) (2021)
Rafsan Ahmed, Ilyes Baali, Cesim Erten, Evis Hoxha, Hilal Kazan
MEXCOwalk: mutual exclusion and coverage based random walk to identify cancer modules. Bioinform. 36 (3) (2020)
Amra Omanovic, Hilal Kazan, Polona Oblak, Tomaz Curk
Data embedding and prediction by sparse tropical matrix factorization. CoRR (2020)
Saber HafezQorani, Aissa Houdjedj, Mehmet Arici, Abdesselam Said, Hilal Kazan
RBPSponge: genome-wide identification of lncRNAs that sponge RBPs. Bioinform. 35 (22) (2019)
Nathan D. Berkowitz, Ian M. Silverman, Daniel M. Childress, Hilal Kazan, Li-San Wang, Brian D. Gregory
A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer). BMC Bioinform. 17 (2016)
Recep Colak, TaeHyung Kim, Hilal Kazan, Yoomi Oh, Miguel Cruz, Adan Valladares-Salgado, Jesus Peralta, Jorge Escobedo, Esteban J. Parra, Philip M. Kim, Anna Goldenberg
JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis. Bioinform. 32 (2) (2016)
Kaan Yilancioglu, Zohar B. Weinstein, Cem Meydan, Azat Akhmetov, Isil Toprak, Arda Durmaz, Ivan Iossifov, Hilal Kazan, Frederick P. Roth, Murat Cokol
Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity. J. Chem. Inf. Model. 54 (8) (2014)
Debashish Ray, Hilal Kazan, Kate B. Cook, Matthew T. Weirauch, Hamed S. Najafabadi, Xiao Li, Serge Gueroussov, Mihai Albu, Hong Zheng, Ally Yang, Hong Na, Manuel Irimia, Leah H. Matzat, Ryan K. Dale, Sarah A. Smith, Christopher A. Yarosh, Seth M. Kelly, Behnam Nabet, Desirea Mecenas, Weimin Li, Rakesh S. Laishram, Mei Qiao, Howard D. Lipshitz, Fabio Piano, Anita H. Corbett, Russ P. Carstens, Brendan J. Frey, Richard A. Anderson, Kristen W. Lynch, Luiz O. F. Penalva, Elissa P. Lei, Andrew G. Fraser, Benjamin J. Blencowe, Quaid Morris, Timothy R. Hughes
A compendium of RNA-binding motifs for decoding gene regulation. Nat. 499 (7457) (2013)
Hilal Kazan, Quaid Morris
RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Kate B. Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris, Timothy R. Hughes
RBPDB: a database of RNA-binding specificities. Nucleic Acids Res. 39 (Database-Issue) (2011)
Hilal Kazan, Debashish Ray, Esther T. Chan, Timothy R. Hughes, Quaid Morris
RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins. PLoS Comput. Biol. 6 (7) (2010)