Frederick P. Roth

Publication Activity (10 Years)

Years Active: 2003-2021
Publications (10 Years): 8

Top Topics

Microarray Gene Expression Data

Protein Interaction

Top Venues

PLoS Comput. Biol.

J. Chem. Inf. Model.

Pacific Symposium on Biocomputing

Publications

Da Kuang, Jochen Weile, Nishka Kishore, Maria Nguyen, Alan F. Rubin, Stanley Fields, Douglas M. Fowler, Frederick P. Roth
MaveRegistry: a collaboration platform for multiplexed assays of variant effect. Bioinform. 37 (19) (2021)
Da Kuang, Rebecca Truty, Jochen Weile, Britt Johnson, Keith Nykamp, Carlos Araya, Robert L. Nussbaum, Frederick P. Roth
Prioritizing genes for systematic variant effect mapping. Bioinform. 36 (22-23) (2021)
Da Kuang, Jochen Weile, Roujia Li, Tom W. Ouellette, Jarry A. Barber, Frederick P. Roth
MaveQuest: a web resource for planning experimental tests of human variant effects. Bioinform. 36 (12) (2020)
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
A reference map of the human binary protein interactome. Nat. 580 (7803) (2020)
Yingzhou Wu, Jochen Weile, Atina G. Coté, Song Sun, Jennifer J. Knapp, Marta Verby, Frederick P. Roth
A web application and service for imputing and visualizing missense variant effect maps. Bioinform. 35 (17) (2019)
Matthew J. Betts, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki, Pablo Minguez, Luca Parca, Frederick P. Roth, Anne-Claude Gavin, Peer Bork, Robert B. Russell
Systematic identification of phosphorylation-mediated protein interaction switches. PLoS Comput. Biol. 13 (3) (2017)
Evangelia Petsalaki, Andreas O. Helbig, Anjali Gopal, Adrian Pasculescu, Frederick P. Roth, Tony Pawson
SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Fan Yang, Evangelia Petsalaki, Thomas Rolland, David E. Hill, Marc Vidal, Frederick P. Roth
Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations. PLoS Comput. Biol. 11 (3) (2015)
Kaan Yilancioglu, Zohar B. Weinstein, Cem Meydan, Azat Akhmetov, Isil Toprak, Arda Durmaz, Ivan Iossifov, Hilal Kazan, Frederick P. Roth, Murat Cokol
Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity. J. Chem. Inf. Model. 54 (8) (2014)
Theodore R. Pak, Frederick P. Roth
ChromoZoom: a flexible, fluid, web-based genome browser. Bioinform. 29 (3) (2013)
Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica C. Mar, Michael A. Calderwood, Amy Baldwin, Bo Zhao, Balaji Santhanam, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth, Jennifer Roecklein-Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush, David E. Hill, Karl Münger, Marc Vidal, Albert-László Barabási
Viral Perturbations of Host Networks Reflect Disease Etiology. PLoS Comput. Biol. 8 (6) (2012)
Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten
Session introduction. Pacific Symposium on Biocomputing (2012)
John E. Beaver, Murat Tasan, Francis D. Gibbons, Weidong Tian, Timothy R. Hughes, Frederick P. Roth
FuncBase : a resource for quantitative gene function annotation. Bioinform. 26 (14) (2010)
Rahul C. Deo, Luke Hunter, Gregory D. Lewis, Guillaume Pare, Ramachandran S. Vasan, Daniel Chasman, Thomas J. Wang, Robert E. Gerszten, Frederick P. Roth
Interpreting Metabolomic Profiles using Unbiased Pathway Models. PLoS Comput. Biol. 6 (2) (2010)
Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan, Frederick P. Roth
Next generation software for functional trend analysis. Bioinform. 25 (22) (2009)
Justin Klekota, Frederick P. Roth
Chemical substructures that enrich for biological activity. Bioinform. 24 (21) (2008)
Gabriel F. Berriz, Frederick P. Roth
The Synergizer service for translating gene, protein and other biological identifiers. Bioinform. 24 (19) (2008)
Justin Klekota, Erik Brauner, Frederick P. Roth, Stuart L. Schreiber
Using High-Throughput Screening Data To Discriminate Compounds with Single-Target Effects from Those with Side Effects. J. Chem. Inf. Model. 46 (4) (2006)
Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader
Probabilistic Paths for Protein Complex Inference. Systems Biology and Computational Proteomics (2006)
Justin Klekota, Frederick P. Roth, Stuart L. Schreiber
Query Chem: a Google-powered web search combining text and chemical structures. Bioinform. 22 (13) (2006)
Lan V. Zhang, Sharyl L. Wong, Oliver D. King, Frederick P. Roth
Predicting co-complexed protein pairs using genomic and proteomic data integration. BMC Bioinform. 5 (2004)
Yonatan H. Grad, Frederick P. Roth, Marc S. Halfon, George M. Church
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Bioinform. 20 (16) (2004)
Gabriel F. Berriz, James V. White, Oliver D. King, Frederick P. Roth
GoFish finds genes with combinations of Gene Ontology attributes. Bioinform. 19 (6) (2003)
Gabriel F. Berriz, Oliver D. King, Barbara Bryant, Chris Sander, Frederick P. Roth
Characterizing gene sets with FuncAssociate. Bioinform. 19 (18) (2003)
Oliver D. King, Jeffrey C. Lee, Aimée M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth
Predicting phenotype from patterns of annotation. ISMB (Supplement of Bioinformatics) (2003)