Luca Parca

Publication Activity (10 Years)

Years Active: 2011-2021
Publications (10 Years): 5

Top Topics

Gene Expression

Protein Interaction

Motif Discovery

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Stefano Castellana, Tommaso Biagini, Luca Parca, Francesco Petrizzelli, Salvatore Daniele Bianco, Angelo Luigi Vescovi, Massimo Carella, Tommaso Mazza
A comparative benchmark of classic DNA motif discovery tools on synthetic data. Briefings Bioinform. 22 (6) (2021)
Stefano Castellana, Tommaso Biagini, Francesco Petrizzelli, Luca Parca, Noemi Panzironi, Viviana Caputo, Angelo L. Vescovi, Massimo Carella, Tommaso Mazza
MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. Nucleic Acids Res. 49 (Database-Issue) (2021)
Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48 (Database-Issue) (2020)
Luca Parca, Bruno Ariano, Andrea Cabibbo, Marco Paoletti, Annalaura Tamburrini, Antonio Palmeri, Gabriele Ausiello, Manuela Helmer-Citterich
Kinome-wide identification of phosphorylation networks in eukaryotic proteomes. Bioinform. 35 (3) (2019)
Matthew J. Betts, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki, Pablo Minguez, Luca Parca, Frederick P. Roth, Anne-Claude Gavin, Peer Bork, Robert B. Russell
Systematic identification of phosphorylation-mediated protein interaction switches. PLoS Comput. Biol. 13 (3) (2017)
Pablo Minguez, Ivica Letunic, Luca Parca, Luz Garcia-Alonso, Joaquín Dopazo, Jaime Huerta-Cepas, Peer Bork
PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins. Nucleic Acids Res. 43 (Database-Issue) (2015)
Pablo Minguez, Ivica Letunic, Luca Parca, Peer Bork
PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins. Nucleic Acids Res. 41 (Database-Issue) (2013)
Luca Parca, Fabrizio Ferrè, Gabriele Ausiello, Manuela Helmer-Citterich
Nucleos: a web server for the identification of nucleotide-binding sites in protein structures. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Luca Parca, Iolanda Mangone, Pier Federico Gherardini, Gabriele Ausiello, Manuela Helmer-Citterich
Phosfinder: a web server for the identification of phosphate-binding sites on protein structures. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)