Fabrizio Ferrè

Publication Activity (10 Years)

Years Active: 2003-2018
Publications (10 Years): 3

Top Topics

Computational Approaches

Nuclear Magnetic Resonance

Protein Structure

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Database J. Biol. Databases Curation

Publications

Marco Pietrosanto, Marta Adinolfi, Riccardo Casula, Gabriele Ausiello, Fabrizio Ferrè, Manuela Helmer-Citterich
BEAM web server: a tool for structural RNA motif discovery. Bioinform. 34 (6) (2018)
Fabrizio Ferrè, Alessio Colantoni, Manuela Helmer-Citterich
Revealing protein-lncRNA interaction. Briefings Bioinform. 17 (1) (2016)
Eugenio Mattei, Marco Pietrosanto, Fabrizio Ferrè, Manuela Helmer-Citterich
Web-Beagle: a web server for the alignment of RNA secondary structures. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Valerio Bianchi, Iolanda Mangone, Fabrizio Ferrè, Manuela Helmer-Citterich, Gabriele Ausiello
webPDBinder: a server for the identification of ligand binding sites on protein structures. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Valerio Bianchi, Alessio Colantoni, Alberto Calderone, Gabriele Ausiello, Fabrizio Ferrè, Manuela Helmer-Citterich
DBATE: database of alternative transcripts expression. Database J. Biol. Databases Curation 2013 (2013)
Luca Parca, Fabrizio Ferrè, Gabriele Ausiello, Manuela Helmer-Citterich
Nucleos: a web server for the identification of nucleotide-binding sites in protein structures. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Fabrizio Ferrè, Yann Ponty, W. A. Lorenz, Peter Clote
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Fabrizio Ferrè, Peter Clote
DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Fabrizio Ferrè, Peter Clote
BTW: a web server for Boltzmann time warping of gene expression time series. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Fabrizio Ferrè, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich
Functional annotation by identification of local surface similarities: a novel tool for structural genomics. BMC Bioinform. 6 (2005)
Fabrizio Ferrè, Peter Clote
DiANNA: a web server for disulfide connectivity prediction. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Fabrizio Ferrè, Peter Clote
Disulfide connectivity prediction using secondary structure information and diresidue frequencies. Bioinform. 21 (10) (2005)
Fabrizio Ferrè, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich
SURFACE: a database of protein surface regions for functional annotation. Nucleic Acids Res. 32 (Database-Issue) (2004)
Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res. 31 (13) (2003)