Geoffrey J. Barton

Publication Activity (10 Years)

Years Active: 1991-2022
Publications (10 Years): 9

Top Topics

Protein Secondary Structure Prediction

Secondary Structure

Statistical Model

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50 (D1) (2022)
Stuart A. MacGowan, Michael I. Barton, Mikhail Kutuzov, Omer Dushek, P. Anton van der Merwe, Geoffrey J. Barton
Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants. PLoS Comput. Biol. 18 (3) (2022)
Javier S. Utgés, Maxim I. Tsenkov, Noah J. M. Dietrich, Stuart A. MacGowan, Geoffrey J. Barton
Ankyrin repeats in context with human population variation. PLoS Comput. Biol. 17 (8) (2021)
Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48 (Database-Issue) (2020)
Kira Mourão, Nicholas J. Schurch, Radek Lucoszek, Kimon Froussios, Katarzyna Mackinnon, Céline Duc, Gordon G. Simpson, Geoffrey J. Barton
Detection and mitigation of spurious antisense expression with RoSA. F1000Research 8 (2019)
Kimon Froussios, Nick J. Schurch, Katarzyna Mackinnon, Marek Gierlinski, Céline Duc, Gordon G. Simpson, Geoffrey J. Barton
How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana. Bioinform. 35 (18) (2019)
Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch
): Identifying differential isoform abundance from RNA-seq. F1000Research 8 (2019)
Peter V. Troshin, James B. Procter, Alexander Sherstnev, Daniel L. Barton, Fábio Madeira, Geoffrey J. Barton
JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure. Bioinform. 34 (11) (2018)
Joseph Ward, Christian Cole, Melanie Febrer, Geoffrey J. Barton
AlmostSignificant: simplifying quality control of high-throughput sequencing data. Bioinform. 32 (24) (2016)
Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon G. Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment. Bioinform. 31 (22) (2015)
Fábio Madeira, Michele Tinti, Gavuthami Murugesan, Emily Berrett, Margaret Stafford, Rachel Toth, Christian Cole, Carol MacKintosh, Geoffrey J. Barton
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides. Bioinform. 31 (14) (2015)
Alexey Drozdetskiy, Christian Cole, James B. Procter, Geoffrey J. Barton
JPred4: a protein secondary structure prediction server. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Michelle S. Scott, Peter V. Troshin, Geoffrey J. Barton
NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins. BMC Bioinform. 12 (2011)
Peter V. Troshin, James B. Procter, Geoffrey J. Barton
Java bioinformatics analysis web services for multiple sequence alignment - JABAWS: MSA. Bioinform. 27 (14) (2011)
Ian M. Overton, Shirley Graham, Katherine A. Gould, Jason Hinds, Catherine H. Botting, Sally Shirran, Geoffrey J. Barton, Peter J. Coote
Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus. BMC Syst. Biol. 5 (2011)
Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton
Human protein-protein interaction prediction. BMC Bioinform. 11 (S-10) (2010)
David M. A. Martin, Diego Miranda-Saavedra, Geoffrey J. Barton
Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases. Nucleic Acids Res. 37 (Database-Issue) (2009)
Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele E. Clamp, Geoffrey J. Barton
Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinform. 25 (9) (2009)
Michelle S. Scott, Fabio Avolio, Motoharu Ono, Angus I. Lamond, Geoffrey J. Barton
Human miRNA Precursors with Box H/ACA snoRNA Features. PLoS Comput. Biol. 5 (9) (2009)
Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton
PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Jonathan R. Manning, Emily R. Jefferson, Geoffrey J. Barton
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction. BMC Bioinform. 9 (2008)
Christian Cole, Jonathan D. Barber, Geoffrey J. Barton
The Jpred 3 secondary structure prediction server. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Ian M. Overton, C. A. Johannes van Niekerk, Lester G. Carter, Alice Dawson, David M. A. Martin, Scott Cameron, Stephen A. McMahon, Malcolm F. White, William N. Hunter, James H. Naismith, Geoffrey J. Barton
TarO: a target optimisation system for structural biology. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Thomas P. Walsh, Caleb Webber, Stephen M. J. Searle, Shane S. Sturrock, Geoffrey J. Barton
SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Ian M. Overton, Gianandrea Padovani, Mark A. Girolami, Geoffrey J. Barton
ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction. Bioinform. 24 (7) (2008)
Michelle S. Scott, Geoffrey J. Barton
Probabilistic prediction and ranking of human protein-protein interactions. BMC Bioinform. 8 (2007)
Michelle S. Scott, Geoffrey J. Barton
Prediction and ranking of human protein-protein interactions within a Bayesian framework. BMC Syst. Biol. 1 (S-1) (2007)
Emily R. Jefferson, Thomas P. Walsh, Timothy J. Roberts, Geoffrey J. Barton
SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. Nucleic Acids Res. 35 (Database-Issue) (2007)
Emily R. Jefferson, Geoffrey J. Barton
The relationship between domain-domain interaction orientation and sequence similarity. BMC Syst. Biol. 1 (S-1) (2007)
Julie Dawn Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, Frédéric Plewniak, Olivier Poch
MACSIMS : multiple alignment of complete sequences information management system. BMC Bioinform. 7 (2006)
G. P. S. Raghava, Geoffrey J. Barton
Quantification of the variation in percentage identity for protein sequence alignments. BMC Bioinform. 7 (2006)
Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Geoffrey J. Barton
Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and Structures. BMC Bioinform. 6 (S-3) (2005)
Adel Golovin, Thomas J. Oldfield, John G. Tate, Samir S. Velankar, Geoffrey J. Barton, Harry Boutselakis, Dimitris Dimitropoulos, Joël Fillon, A. Hussain, John M. C. Ionides, Melford John, Peter A. Keller, Evgeny B. Krissinel, P. McNeil, Avi Naim, Richard H. Newman, Anne Pajon, Jorge Pineda, Abdel-Krim Rachedi, J. Copeland, Andrey Sitnov, Siamak Sobhany, Antonio Suarez-Uruena, G. J. Swaminathan, Mohammed Tagari, Swen Tromm, Wim F. Vranken, Kim Henrick
E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res. 32 (Database-Issue) (2004)
Michele E. Clamp, James A. Cuff, Stephen M. J. Searle, Geoffrey J. Barton
The Jalview Java alignment editor. Bioinform. 20 (3) (2004)
David M. A. Martin, Matthew Berriman, Geoffrey J. Barton
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinform. 5 (2004)
David M. A. Martin, Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell
Visual Representation of Database Search Results: The RHIMS Plot. Bioinform. 19 (8) (2003)
Caleb Webber, Geoffrey J. Barton
Increased Coverage Obtained by Combination of Methods for Protein Sequence Database Searching. Bioinform. 19 (11) (2003)
G. P. S. Raghava, Stephen M. J. Searle, Patrick C. Audley, Jonathan D. Barber, Geoffrey J. Barton
OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy. BMC Bioinform. 4 (2003)
Caleb Webber, Geoffrey J. Barton
Estimation of P-values for global alignments of protein sequences. Bioinform. 17 (12) (2001)
Asim S. Siddiqui, Uwe Dengler, Geoffrey J. Barton
3Dee: a database of protein structural domains. Bioinform. 17 (1) (2001)
James A. Cuff, Ewan Birney, Michele E. Clamp, Geoffrey J. Barton
ProtEST: protein multiple sequence alignments from expressed sequence tags. Bioinform. 16 (2) (2000)
James A. Cuff, Michele E. Clamp, Asim S. Siddiqui, M. Finlay, Geoffrey J. Barton
JPred: a consensus secondary structure prediction server. Bioinform. 14 (10) (1998)
Robert B. Russell, R. R. Copley, Geoffrey J. Barton
Protein fold recognition from secondary structure assignments. HICSS (5) (1995)
C. D. Livingstone, Geoffrey J. Barton
Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation. Comput. Appl. Biosci. 9 (6) (1993)
Geoffrey J. Barton
An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps. Comput. Appl. Biosci. 9 (6) (1993)
Geoffrey J. Barton
Scanning protein sequence databanks using a distributed processing workstation network. Comput. Appl. Biosci. 7 (1) (1991)