R. Gonzalo Parra

Publication Activity (10 Years)

Years Active: 2012-2022
Publications (10 Years): 8

Top Topics

Protein Structure

Subcellular Localization

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50 (D1) (2022)
Atilio O. Rausch, Maria I Freiberger, Cesar O. Leonetti, Diego M. Luna, Leandro G. Radusky, Peter G. Wolynes, Diego U. Ferreiro, R. Gonzalo Parra
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations. Bioinform. 37 (18) (2021)
Nikolaos Papadopoulos, R. Gonzalo Parra, Johannes Söding
PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. Bioinform. 35 (18) (2019)
Mehedi Hassan, Aishwarya Alex Namasivayam, Dan F. DeBlasio, Nazeefa Fatima, Benjamin Siranosian, R. Gonzalo Parra, Bart Cuypers, Sayane Shome, Alexander Miguel Monzon, Julien Fumey, Farzana Rahman
Reflections on a journey: a retrospective of the ISCB Student Council symposium series. BMC Bioinform. (12) (2018)
Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
Inferring repeat-protein energetics from evolutionary information. PLoS Comput. Biol. 13 (6) (2017)
R. Gonzalo Parra, Cristian Oscar Rohr, Daniel Koile, Carolina Perez-Castro, Patricio Yankilevich
-regulatory modules prediction. Bioinform. 32 (8) (2016)
R. Gonzalo Parra, Nicholas P. Schafer, Leandro G. Radusky, Min-Yeh Tsai, A. Brenda Guzovsky, Peter G. Wolynes, Diego U. Ferreiro
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. BMC Bioinform. 17 (S-3) (2016)
Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
Capturing coevolutionary signals inrepeat proteins. BMC Bioinform. 16 (2015)
R. Gonzalo Parra, Rocío Espada, Nina Verstraete, Diego U. Ferreiro
Structural and Energetic Characterization of the Ankyrin Repeat Protein Family. PLoS Comput. Biol. 11 (12) (2015)
Tarun Mishra, R. Gonzalo Parra, Thomas Abeel
The Upside of Failure: How Regional Student Groups Learn from Their Mistakes. PLoS Comput. Biol. 10 (8) (2014)
Tomás Di Domenico, Emilio Potenza, Ian Walsh, R. Gonzalo Parra, Manuel Giollo, Giovanni Minervini, Damiano Piovesan, Awais Ihsan, Carlo Ferrari, Andrey V. Kajava, Silvio C. E. Tosatto
RepeatsDB: a database of tandem repeat protein structures. Nucleic Acids Res. 42 (Database-Issue) (2014)
Cristian Oscar Rohr, R. Gonzalo Parra, Patricio Yankilevich, Carolina Perez-Castro
INSECT: IN-silico SEarch for Co-occurring Transcription factors. Bioinform. 29 (22) (2013)
Michael Jenik, R. Gonzalo Parra, Leandro G. Radusky, Adrian Gustavo Turjanski, Peter G. Wolynes, Diego U. Ferreiro
Protein frustratometer: a tool to localize energetic frustration in protein molecules. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)