Roland L. Dunbrack Jr.

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 6

Top Topics

Amino Acid Sequences

Molecular Biology

Protein Complexes

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Qifang Xu, Roland L. Dunbrack Jr.
The protein common assembly database (ProtCAD) - a comprehensive structural resource of protein complexes. Nucleic Acids Res. 51 (D1) (2023)
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50 (D1) (2022)
Vivek Modi, Roland L. Dunbrack Jr.
Kincore: a web resource for structural classification of protein kinases and their inhibitors. Nucleic Acids Res. 50 (D1) (2022)
Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau
Better together: Elements of successful scientific software development in a distributed collaborative community. PLoS Comput. Biol. 16 (5) (2020)
Maxim V. Shapovalov, Slobodan Vucetic, Roland L. Dunbrack Jr.
A new clustering and nomenclature for beta turns derived from high-resolution protein structures. PLoS Comput. Biol. 15 (3) (2019)
Jared Adolf-Bryfogle, Oleksandr Kalyuzhniy, Michael Kubitz, Brian D. Weitzner, Xiaozhen Hu, Yumiko Adachi, William R. Schief, Roland L. Dunbrack Jr.
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. PLoS Comput. Biol. 14 (4) (2018)
Jared Adolf-Bryfogle, Qifang Xu, Benjamin North, Andreas Lehmann, Roland L. Dunbrack Jr.
PyIgClassify: a database of antibody CDR structural classifications. Nucleic Acids Res. 43 (Database-Issue) (2015)
Joanna S. G. Slusky, Roland L. Dunbrack Jr.
Charge asymmetry in the proteins of the outer membrane. Bioinform. 29 (17) (2013)
Qifang Xu, Roland L. Dunbrack Jr.
Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB. Bioinform. 28 (21) (2012)
Qifang Xu, Roland L. Dunbrack Jr.
The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple crystal forms. Nucleic Acids Res. 39 (Database-Issue) (2011)
Philip E. Bourne, Bojan Beran, Chunxiao Bi, Wolfgang Bluhm, Roland L. Dunbrack Jr., Andreas Prlic, Greg B. Quinn, Peter W. Rose, Raship Shah, Wendy Tao, Brian D. Weitzner, Benjamin T. Yukich
Will Widgets and Semantic Tagging Change Computational Biology? PLoS Comput. Biol. 6 (2) (2010)
Daniel Ting, Guoli Wang, Maxim V. Shapovalov, Rajib Mitra, Michael I. Jordan, Roland L. Dunbrack Jr.
Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model. PLoS Comput. Biol. 6 (4) (2010)
Qifang Xu, Adrian A. Canutescu, Zoran Obradovic, Roland L. Dunbrack Jr.
ProtBuD: a database of biological unit structures of protein families and superfamilies. Bioinform. 23 (15) (2007)
Maxim V. Shapovalov, Adrian A. Canutescu, Roland L. Dunbrack Jr.
BioDownloader: bioinformatics downloads and updates in a few clicks. Bioinform. 23 (11) (2007)
Qifang Xu, Adrian A. Canutescu, Zoran Obradovic, Roland L. Dunbrack Jr.
ProtBuD: a database of biological unit structures of protein families and superfamilies. Bioinform. 22 (23) (2006)
Adrian A. Canutescu, Roland L. Dunbrack Jr.
MollDE: a homology modeling framework you can click with. Bioinform. 21 (12) (2005)
Guoli Wang, Roland L. Dunbrack Jr.
PISCES: recent improvements to a PDB sequence culling server. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Robel Y. Kahsay, Guoli Wang, Guang R. Gao, Li Liao, Roland L. Dunbrack Jr.
Quasi-consensus-based comparison of profile hidden Markov models for protein sequences. Bioinform. 21 (10) (2005)
Guoli Wang, Roland L. Dunbrack Jr.
PISCES: a protein sequence culling server. Bioinform. 19 (12) (2003)
Robel Y. Kahsay, Guoli Wang, Nataraj Dongre, Guang R. Gao, Roland L. Dunbrack Jr.
CASA: a server for the critical assessment of protein sequence alignment accuracy. Bioinform. 18 (3) (2002)
Jeffrey D. Grant, Roland L. Dunbrack Jr., Frank J. Manion, Michael F. Ochs
BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster. Bioinform. 18 (5) (2002)
J. Michael Sauder, Roland L. Dunbrack Jr.
Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest. ISMB (2000)