Frank J. Manion

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 19

Top Topics

Natural Language

Biomedical Ontologies

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Surabhi Datta, Kyeryoung Lee, Hunki Paek, Frank J. Manion, Nneka Ofoegbu, Jingcheng Du, Ying Li, Liang-Chin Huang, Jingqi Wang, Bin Lin, Hua Xu, Xiaoyan Wang
AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Meng Zhang, Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris, Cooper Stansbury, Huy Anh Pham, Cui Tao
Machine learning-based donor permission extraction from informed consent documents. BMC Bioinform. 24 (1) (2023)
Jingqi Wang, Yaoyun Zhang, Bin Lin, Huy Anh Pham, Long He, Jingcheng Du, Frank J. Manion
LANN: an Integrated Online Annotation Tool for Information Extraction. ICHI (2022)
Muhammad Amith, Marcelline R. Harris, Cooper Stansbury, Kathleen Ford, Frank J. Manion, Cui Tao
Expressing and Executing Informed Consent Permissions using SWRL: The All of Us Use Case. AMIA (2021)
Jingqi Wang, Noor Abu-El-Rub, Josh Gray, Huy Anh Pham, Yujia Zhou, Frank J. Manion, Mei Liu, Xing Song, Hua Xu, Masoud Rouhizadeh, Yaoyun Zhang
COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model. J. Am. Medical Informatics Assoc. 28 (6) (2021)
Muhammad Amith, Marcelline R. Harris, Cooper Stansbury, Kathleen Ford, Frank J. Manion, Cui Tao
Expressing and Executing Informed Consent Permissions Using SWRL: The All of Us Use Case. CoRR (2021)
Jingqi Wang, Huy Anh Pham, Frank J. Manion, Masoud Rouhizadeh, Yaoyun Zhang
COVID-19 SignSym: A fast adaptation of general clinical NLP tools to identify and normalize COVID-19 signs and symptoms to OMOP common data model. CoRR (2020)
Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Elizabeth Umberfield, Frank J. Manion, Cui Tao
Expanding the Representation of Permissions and Deontic Roles in the Informed Consent Ontology (ICO). AMIA (2019)
Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao
Architecture and usability of OntoKeeper, an ontology evaluation tool. BMC Medical Informatics Decis. Mak. (4) (2019)
Marcelline R. Harris, Frank J. Manion, Madhuri Sankaranarayanapillai, Hsing-yi Song, Marisa Conte, Cui Tao
A Scoping Review to Identify Biobank Classification and Permissions to Share Metadata. AMIA (2019)
Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Frank J. Manion, Cui Tao
Refactoring and Expanding the Informed Consent Ontology (ICO). AMIA (2019)
Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Frank J. Manion, Marcelline R. Harris, Cui Tao
Using Stases to Enrich Queries for When and Where Regulations Are in Force. ICBO (2019)
Frank J. Manion, Marcelline R. Harris, Muhamamd F. Amith, Cui Tao
Development and Validation of an Ontological Representation of the US Common Rule. AMIA (2018)
J. Neil Otte, Cooper Stansbury, Jonathan Vajda, Frank J. Manion, Elizabeth Umberfield, Yongqun He, Marcelline R. Harris, Jihad S. Obeid, Mathias Brochhausen, William D. Duncan, Cui Tao
Coordinated Evolution of Ontologies of Informed Consent. ICBO (2018)
Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao
OntoKeeper: Semiotic-driven Ontology Evaluation Tool For Biomedical Ontologists. BIBM (2018)
Muhammad Amith, Frank J. Manion, Marcelline R. Harris, Yaoyun Zhang, Hua Xu, Cui Tao
Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. MedInfo (2017)
Marcelline R. Harris, Frank J. Manion, Hsing-yi Song, Yongqun He, Muhamamd F. Amith, Cui Tao
From Scoping Review to Metadata: An Evidence-Based Approach to Identifying Informed Consent Metadata for Biorepositories. AMIA (2017)
Marina Z. Matatova, Paul Fearn, Eric B. Durbin, Gary Levin, Frank J. Manion, Patrick Mergler
Evaluation of the Surveillance, Epidemiology, and End Results Data Management System (SEER*DMS) to support the efforts in enhancing U.S cancer surveillance. AMIA (2017)
Airong Luo, Marcelline R. Harris, Frank J. Manion, Barbara Mirel
A Research Capability Framework. AMIA (2016)
Frank J. Manion, Elizabeth Eisenhauer, Alla Karnovsky, Yongqun He, Yu Lin, Marcelline R. Harris
Analysis of Content Coverage for Informed Consent Concepts. AMIA (2014)
Yu Lin, Marcelline R. Harris, Frank J. Manion, Elizabeth Eisenhauer, Bin Zhao, Wei Shi, Alla Karnovsky, Yongqun He
Development of a BFO-Based Informed Consent Ontology (ICO). ICBO (2014)
David A. Hanauer, Yang Liu, Qiaozhu Mei, Frank J. Manion, Ulysses J. Balis, Kai Zheng
Hedging their Mets: The Use of Uncertainty Terms in Clinical Documents and its Potential Implications when Sharing the Documents with Patients. AMIA (2012)
Dan Stuart, John Harju, Wei Shi, David A. Hanauer, Dina Aronzon, Jinlei Liu, Raveen Sharma, Frank J. Manion, Haiping Xia, Carolyn Hutter, Stephen Gruber
tranSMART Supports a Post-GWAS Data Coordinating Center. AMIA (2012)
Anjali Bhandari, Wei Shi, John Harju, Frank J. Manion, Becky Marshall, Andrew Chang, Rebecca M. Minter
Extending OpenClinica using Web 2.0 Technologies. AMIA (2012)
Alla Karnovsky, Frank J. Manion, Terry E. Weymouth, V. Glenn Tarcea, Lisa Powell, Blake Roessler, Nicholas Steneck
Development of an Informed Consent Ontology to Support Biobanking. AMIA (2012)
Risa B. Myers, James W. Lomax III, Frank J. Manion, Nancy M. Wood, Todd R. Johnson
Data visualization of teen birth rate data using freely available rapid prototyping tools. IHI (2010)
Frank J. Manion, Robert J. Robbins, William A. Weems, Rebecca S. Crowley
Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study. BMC Medical Informatics Decis. Mak. 9 (2009)
Hua Min, Frank J. Manion, Elizabeth Goralczyk, Yu-Ning Wong, Eric A. Ross, J. Robert Beck
Integration of prostate cancer clinical data using an ontology. J. Biomed. Informatics 42 (6) (2009)
Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinform. 10 (2009)
Ghislain Bidaut, Frank J. Manion, Christophe Garcia, Michael F. Ochs
WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis. J. Biomed. Informatics 39 (4) (2006)
Jeffrey D. Grant, Luke A. Somers, Yue Zhang, Frank J. Manion, Ghislain Bidaut, Michael F. Ochs
FGDP: functional genomics data pipeline for automated, multiple microarray data analyses. Bioinform. 20 (2) (2004)
Andrew V. Kossenkov, Frank J. Manion, Eugene V. Korotkov, Thomas D. Moloshok, Michael F. Ochs
ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database. Bioinform. 19 (5) (2003)
Thomas D. Moloshok, R. R. Klevecz, Jeffrey D. Grant, Frank J. Manion, W. F. Speier IV, Michael F. Ochs
Application of Bayesian Decomposition for analysing microarray data. Bioinform. 18 (4) (2002)
Jeffrey D. Grant, Roland L. Dunbrack Jr., Frank J. Manion, Michael F. Ochs
BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster. Bioinform. 18 (5) (2002)