Juan Fernández-Recio

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 6

Top Topics

Interaction Networks

Computational Methods

Protein Complexes

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50 (D1) (2022)
Pep Amengual-Rigo, Juan Fernández-Recio, Victor Guallar
UEP: an open-source and fast classifier for predicting the impact of mutations in protein-protein complexes. Bioinform. 37 (3) (2021)
Miguel Romero-Durana, Brian Jiménez-García, Juan Fernández-Recio
pyDockEneRes: per-residue decomposition of protein-protein docking energy. Bioinform. 36 (7) (2020)
Justina Jankauskaite, Brian Jiménez-García, Justas Dapkunas, Juan Fernández-Recio, Iain H. Moal
SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation. Bioinform. 35 (3) (2019)
Brian Jiménez-García, Jorge Roel-Touris, Miguel Romero-Durana, Miquel Vidal, Daniel Jiménez-González, Juan Fernández-Recio
LightDock: a new multi-scale approach to protein-protein docking. Bioinform. 34 (1) (2018)
Iain H. Moal, Didier Barradas-Bautista, Brian Jiménez-García, Mieczyslaw Torchala, Arjan van der Velde, Thom Vreven, Zhiping Weng, Paul A. Bates, Juan Fernández-Recio
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection. Bioinform. 33 (12) (2017)
Iain H. Moal, Brian Jiménez-García, Juan Fernández-Recio
CCharPPI web server: computational characterization of protein-protein interactions from structure. Bioinform. 31 (1) (2015)
Iain H. Moal, Juan Fernández-Recio
Comment on 'protein-protein binding affinity prediction from amino acid sequence'. Bioinform. 31 (4) (2015)
Brian Jiménez-García, Carles Pons, Dmitri I. Svergun, Pau Bernadó, Juan Fernández-Recio
pyDockSAXS: protein-protein complex structure by SAXS and computational docking. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Mieczyslaw Torchala, Iain H. Moal, Raphael A. G. Chaleil, Juan Fernández-Recio, Paul A. Bates
SwarmDock: a server for flexible protein-protein docking. Bioinform. 29 (6) (2013)
Brian Jiménez-García, Carles Pons, Juan Fernández-Recio
pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring. Bioinform. 29 (13) (2013)
Rudi Agius, Mieczyslaw Torchala, Iain H. Moal, Juan Fernández-Recio, Paul A. Bates
Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization. PLoS Comput. Biol. 9 (9) (2013)
Iain H. Moal, Mieczyslaw Torchala, Paul A. Bates, Juan Fernández-Recio
The scoring of poses in protein-protein docking: current capabilities and future directions. BMC Bioinform. 14 (2013)
Carles Pons, Daniel Jiménez-González, Cecilia González-Alvarez, Harald Servat, Daniel Cabrera-Benitez, Xavier Aguilar, Juan Fernández-Recio
Cell-Dock: high-performance protein-protein docking. Bioinform. 28 (18) (2012)
Iain H. Moal, Juan Fernández-Recio
SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models. Bioinform. 28 (20) (2012)
Carles Pons, Fabian Glaser, Juan Fernández-Recio
Prediction of protein-binding areas by small-world residue networks and application to docking. BMC Bioinform. 12 (2011)
Carles Pons, David Talavera, Xavier de la Cruz, Modesto Orozco, Juan Fernández-Recio
Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein-Protein Docking. J. Chem. Inf. Model. 51 (2) (2011)
Albert Solernou, Juan Fernández-Recio
Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation. BMC Bioinform. 11 (2010)
Laura Perez-Cano, Albert Solernou, Carles Pons, Juan Fernández-Recio
Structural Prediction of Protein-RNA Interaction by Computational Docking with Propensity-Based Statistical Potentials. Pacific Symposium on Biocomputing (2010)
Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy
Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments. PLoS Comput. Biol. 5 (8) (2009)
Yasir Arafat, Joarder Kamruzzaman, Gour C. Karmakar, Juan Fernández-Recio
Predicting protein - protein interfaces as clusters of Optimal Docking Area points. Int. J. Data Min. Bioinform. 3 (1) (2009)
José Ignacio Garzón, José Ramón López-Blanco, Carles Pons, Julio A. Kovacs, Ruben Abagyan, Juan Fernández-Recio, Pablo Chacón
FRODOCK: a new approach for fast rotational protein-protein docking. Bioinform. 25 (19) (2009)
Bernard Degryse, Juan Fernández-Recio, Valentina Citro, Francescol Blasi, Maria Vittoria Cubellis
In silico docking of urokinase plasminogen activator and integrins. BMC Bioinform. 9 (S-2) (2008)
Solène Grosdidier, Juan Fernández-Recio
Identification of hot-spot residues in protein-protein interactions by computational docking. BMC Bioinform. 9 (2008)
Tammy M. K. Cheng, Tom L. Blundell, Juan Fernández-Recio
Structural assembly of two-domain proteins by rigid-body docking. BMC Bioinform. 9 (2008)
Yasir Arafat, Gour C. Karmakar, Joarder Kamruzzaman, Juan Fernández-Recio
Predicting Protein-Protein Interface using Desolvation Energy Similarity Matching. CIBCB (2006)
Juan Fernández-Recio
Optimized Desolvation for Rigid-Body Docking: Fast Prediction of Protein Interaction Sites. Spanish Bioinformatics Conference (2004)
Juan Fernández-Recio, Maxim Totrov, Ruben Abagyan
Screened Charge Electrostatic Model in Protein-Protein Docking Simulations. Pacific Symposium on Biocomputing (2002)