Paul A. Bates

Publication Activity (10 Years)

Years Active: 2002-2019
Publications (10 Years): 4

Top Topics

Future Directions

Biochemical Networks

Systems Biology

Top Venues

PLoS Comput. Biol.

Publications

Marica Muffoletto, Xiao Fu, Aditi Roy, Marta Varela, Paul A. Bates, Oleg V. Aslanidi
Development of a Deep Learning Method to Predict Optimal Ablation Patterns for Atrial Fibrillation. CIBCB (2019)
Esther Wershof, Danielle Park, Robert P. Jenkins, David J. Barry, Erik Sahai, Paul A. Bates
Matrix feedback enables diverse higher-order patterning of the extracellular matrix. PLoS Comput. Biol. 15 (10) (2019)
Iain H. Moal, Didier Barradas-Bautista, Brian Jiménez-García, Mieczyslaw Torchala, Arjan van der Velde, Thom Vreven, Zhiping Weng, Paul A. Bates, Juan Fernández-Recio
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection. Bioinform. 33 (12) (2017)
Timothy R. Law, Jonny Hancox, Tammy M. K. Cheng, Raphael A. G. Chaleil, Steven A. Wright, Paul A. Bates, Stephen A. Jarvis
Optimisation of a Molecular Dynamics Simulation of Chromosome Condensation. SBAC-PAD (2016)
Mieczyslaw Torchala, Iain H. Moal, Raphael A. G. Chaleil, Juan Fernández-Recio, Paul A. Bates
SwarmDock: a server for flexible protein-protein docking. Bioinform. 29 (6) (2013)
Rudi Agius, Mieczyslaw Torchala, Iain H. Moal, Juan Fernández-Recio, Paul A. Bates
Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization. PLoS Comput. Biol. 9 (9) (2013)
Iain H. Moal, Mieczyslaw Torchala, Paul A. Bates, Juan Fernández-Recio
The scoring of poses in protein-protein docking: current capabilities and future directions. BMC Bioinform. 14 (2013)
Mieczyslaw Torchala, Przemyslaw Chelminiak, Michal Kurzynski, Paul A. Bates
RaTrav: a tool for calculating mean first-passage times on biochemical networks. BMC Syst. Biol. 7 (2013)
Iain H. Moal, Paul A. Bates
Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding. PLoS Comput. Biol. 8 (1) (2012)
Tammy M. K. Cheng, Lucas Goehring, Linda Jeffery, Yu-En Lu, Jacqueline Hayles, Béla Novák, Paul A. Bates
A Structural Systems Biology Approach for Quantifying the Systemic Consequences of Missense Mutations in Proteins. PLoS Comput. Biol. 8 (10) (2012)
Iain H. Moal, Rudi Agius, Paul A. Bates
Protein-protein binding affinity prediction on a diverse set of structures. Bioinform. 27 (21) (2011)
Xiaofan F. Li, Iain H. Moal, Paul A. Bates
Bridging the gaps: atomic simulation of macromolecular environment brings together protein docking, interaction kinetics and the crowding effects. BMC Bioinform. 11 (S-10) (2010)
Katie Bentley, Giovanni Mariggi, Holger Gerhardt, Paul A. Bates
Tipping the Balance: Robustness of Tip Cell Selection, Migration and Fusion in Angiogenesis. PLoS Comput. Biol. 5 (10) (2009)
Katie Bentley, Paul A. Bates, Holger Gerhardt
Artificial life as cancer research - embodied agent modelling of blood vessel growth in tumours. ALIFE (2008)
Christopher S. Page, Paul A. Bates
Can MM-PBSA calculations predict the specificities of protein kinase inhibitors? J. Comput. Chem. 27 (16) (2006)
Alexander L. Tournier, Paul W. Fitzjohn, Paul A. Bates
Probability-based model of protein-protein interactions on biological timescales. Algorithms Mol. Biol. 1 (2006)
Marc N. Offman, Paul W. Fitzjohn, Paul A. Bates
Developing a move-set for protein model refinement. Bioinform. 22 (15) (2006)
Pall F. Jonsson, Paul A. Bates
Global topological features of cancer proteins in the human interactome. Bioinform. 22 (18) (2006)
Pall F. Jonsson, Tamara Cavanna, Daniel Zicha, Paul A. Bates
Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis. BMC Bioinform. 7 (2006)
Bruno Contreras-Moreira, Paul A. Bates
Domain Fishing: a first step in protein comparative modelling. Bioinform. 18 (8) (2002)