Thom Vreven

Publication Activity (10 Years)

Years Active: 2000-2021
Publications (10 Years): 4

Top Topics

Predicting Protein

High Throughput

Top Venues

Briefings Bioinform.

J. Comput. Chem.

Publications

Tyler Borrman, Brian G. Pierce, Thom Vreven, Brian M. Baker, Zhiping Weng
High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides. Bioinform. 36 (22-23) (2021)
Sweta Vangaveti, Thom Vreven, Yang Zhang, Zhiping Weng
Integrating ab initio and template-based algorithms for protein-protein complex structure prediction. Bioinform. 36 (3) (2020)
Thom Vreven, Stephen C. Miller
Computational investigation into the fluorescence of luciferin analogues. J. Comput. Chem. 40 (2) (2019)
Iain H. Moal, Didier Barradas-Bautista, Brian Jiménez-García, Mieczyslaw Torchala, Arjan van der Velde, Thom Vreven, Zhiping Weng, Paul A. Bates, Juan Fernández-Recio
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection. Bioinform. 33 (12) (2017)
Thom Vreven, Howook Hwang, Brian G. Pierce, Zhiping Weng
Evaluating template-based and template-free protein-protein complex structure prediction. Briefings Bioinform. 15 (2) (2014)
Brian G. Pierce, Kevin Wiehe, Howook Hwang, Bong-Hyun Kim, Thom Vreven, Zhiping Weng
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers. Bioinform. 30 (12) (2014)
Brian G. Pierce, Thom Vreven, Zhiping Weng
Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes. BMC Bioinform. 15 (2014)
Thom Vreven, Keiji Morokuma, Ödön Farkas, H. Bernhard Schlegel, Michael J. Frisch
Geometry optimization with QM/MM, ONIOM, and other combined methods. I. Microiterations and constraints. J. Comput. Chem. 24 (6) (2003)
Keiji Morokuma, Djamaladdin G. Musaev, Thom Vreven, Harold Basch, Maricel Torrent, Dmitry V. Khoroshun
Model studies of the structures, reacitivities, and reaction mechanisms of metalloenzymes. IBM J. Res. Dev. 45 (3) (2001)
Thom Vreven, Keiji Morokuma
On the application of the IMOMO (integrated molecular orbital + molecular orbital) method. J. Comput. Chem. 21 (16) (2000)