Claudia Andreini

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 6

Top Topics

Protein Families

Physicochemical Properties

Top Venues

J. Chem. Inf. Model.

Nucleic Acids Res.

Publications

Vincenzo Laveglia, Milana Bazayeva, Claudia Andreini, Antonio Rosato
Hunting down zinc(II)-binding sites in proteins with distance matrices. Bioinform. 39 (10) (2023)
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50 (D1) (2022)
Vincenzo Laveglia, Andrea Giachetti, Davide Sala, Claudia Andreini, Antonio Rosato
Learning to Identify Physiological and Adventitious Metal-Binding Sites in the Three-Dimensional Structures of Proteins by Following the Hints of a Deep Neural Network. J. Chem. Inf. Model. 62 (12) (2022)
Marina Macchiagodena, Marco Pagliai, Claudia Andreini, Antonio Rosato, Piero Procacci
Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc(II)-Binding Residues in Sites with Four Protein Ligands. J. Chem. Inf. Model. 59 (9) (2019)
Valeria Putignano, Antonio Rosato, Lucia Banci, Claudia Andreini
MetalPDB in 2018: a database of metal sites in biological macromolecular structures. Nucleic Acids Res. 46 (Database-Issue) (2018)
Yana Valasatava, Antonio Rosato, Lucia Banci, Claudia Andreini
MetalPredator: a web server to predict iron-sulfur cluster binding proteomes. Bioinform. 32 (18) (2016)
Claudia Andreini, Gabriele Cavallaro, Antonio Rosato, Yana Valasatava
: A Tool for the Structural Alignment of Minimal Functional Sites in Metal-Binding Proteins and Nucleic Acids. J. Chem. Inf. Model. 53 (11) (2013)
Claudia Andreini, Gabriele Cavallaro, Serena Lorenzini, Antonio Rosato
MetalPDB: a database of metal sites in biological macromolecular structures. Nucleic Acids Res. 41 (Database-Issue) (2013)
Gemma L. Holliday, Claudia Andreini, Julia D. Fischer, Syed Asad Rahman, Daniel E. Almonacid, Sophie T. Williams, William R. Pearson
MACiE: exploring the diversity of biochemical reactions. Nucleic Acids Res. 40 (Database-Issue) (2012)
Claudia Andreini, Gabriele Cavallaro, Serena Lorenzini
FindGeo: a tool for determining metal coordination geometry. Bioinform. 28 (12) (2012)
Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Leonardo Decaria, Antonio Rosato
A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms. J. Chem. Inf. Model. 51 (3) (2011)
Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Gemma L. Holliday, Janet M. Thornton
Metal-MACiE: a database of metals involved in biological catalysis. Bioinform. 25 (16) (2009)
Andrea Passerini, Claudia Andreini, Sauro Menchetti, Antonio Rosato, Paolo Frasconi
Predicting zinc binding at the proteome level. BMC Bioinform. 8 (2007)
Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato
Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence. RECOMB (2006)
Claudia Andreini, Ivano Bertini, Antonio Rosato
A hint to search for metalloproteins in gene banks. Bioinform. 20 (9) (2004)