Petr Skoda

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 34

Top Topics

Space Exploration

Protein Interaction

Top Venues

Nucleic Acids Res.

ESWC (Satellite Events)

Publications

Ansgar Scherp, Gerd Gröner, Petr Skoda, Katja Hose, Maria-Esther Vidal
Semantic Web: Past, Present, and Future. TGDK 2 (1) (2024)
Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. TGDK 1 (1) (2023)
Jakub Klímek, Pavel Koupil, Petr Skoda, Jáchym Bártík, Stepán Stenchlák, Martin Necaský, Irena Holubová
Atlas: A Toolset for Efficient Model-Driven Data Exchange in Data Spaces. MoDELS (Companion) (2023)
Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. CoRR (2023)
David Jakubec, Petr Skoda, Radoslav Krivák, Marian Novotny, David Hoksza
PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. Nucleic Acids Res. 50 (W1) (2022)
Martin Necaský, Petr Skoda, David Bernhauer, Jakub Klímek, Tomás Skopal
Modular framework for similarity-based dataset discovery using external knowledge. Data Technol. Appl. 56 (4) (2022)
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50 (D1) (2022)
Stepán Stenchlák, Martin Necaský, Petr Skoda, Jakub Klímek
DataSpecer: A Model-Driven Approach to Managing Data Specifications. ESWC (Satellite Events) (2022)
David Bernhauer, Martin Necaský, Petr Skoda, Jakub Klímek, Tomás Skopal
Open dataset discovery using context-enhanced similarity search. Knowl. Inf. Syst. 64 (12) (2022)
Tomás Skopal, David Bernhauer, Petr Skoda, Jakub Klímek, Martin Necaský
Similarity vs. Relevance: From Simple Searches to Complex Discovery. SISAP (2021)
Petr Skoda, Jakub Matejík, Tomás Skopal
Visualizer of Dataset Similarity Using Knowledge Graph. SISAP (2020)
Martin Vita, Petr Skoda
Open IE-Triples Inference - Corpora Development and DNN Architectures. FedCSIS (2020)
Petr Skoda, David Bernhauer, Martin Necaský, Jakub Klímek, Tomás Skopal
Evaluation Framework for Search Methods Focused on Dataset Findability in Open Data Catalogs. iiWAS (2020)
Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48 (Database-Issue) (2020)
Jakub Klímek, Petr Skoda, Martin Necaský
Survey of tools for Linked Data consumption. Semantic Web 10 (4) (2019)
Petr Skoda, Jakub Klímek, Martin Necaský, Tomás Skopal
Explainable Similarity of Datasets Using Knowledge Graph. SISAP (2019)
Lukás Jendele, Radoslav Krivák, Petr Skoda, Marian Novotny, David Hoksza
PrankWeb: a web server for ligand binding site prediction and visualization. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Jan Jelínek, Petr Skoda, David Hoksza
Software framework for similarity-based prediction of protein interfaces. BIBM (2018)
Tomás Knap, Peter Hanecák, Jakub Klímek, Christian Mader, Martin Necaský, Bert Van Nuffelen, Petr Skoda
UnifiedViews: An ETL tool for RDF data management. Semantic Web 9 (5) (2018)
Jakub Klímek, Petr Skoda
LinkedPipes DCAT-AP Viewer: A Native DCAT-AP Data Catalog. ISWC (P&D/Industry/BlueSky) (2018)
Jakub Klímek, Petr Skoda
LinkedPipes ETL in use: practical publication and consumption of linked data. iiWAS (2017)
Petr Skoda, David Hoksza, Jan Jelínek
Platform for ligand-based virtual screening integration. BIBM (2017)
Jakub Klímek, Petr Skoda
Speeding up Publication of Linked Data Using Data Chunking in LinkedPipes ETL. OTM Conferences (2) (2017)
Radoslav Krivák, David Hoksza, Petr Skoda
Improving quality of ligand-binding site prediction with Bayesian optimization. BIBM (2017)
Jan Jelínek, Petr Skoda, David Hoksza
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites. BMC Bioinform. 18 (15) (2017)
Martin Necaský, Jakub Klímek, Petr Skoda
Practical Use Cases for Linked Open Data in eGovernment Demonstrated on the Czech Republic. EGOVIS (2017)
Jindrich Mynarz, Jakub Klímek, Marek Dudás, Petr Skoda, Christiane Engels, Fathoni A. Musyaffa, Vojtech Svátek
Reusable transformations of Data Cube Vocabulary datasets from the fiscal domain. SemStats@ISWC (2016)
Petr Skoda, David Hoksza
Benchmarking platform for ligand-based virtual screening. BIBM (2016)
David Hoksza, Petr Skoda
Using Bayesian modeling on molecular fragments features for virtual screening. CIBCB (2016)
Jan Jelínek, Petr Skoda, David Hoksza
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites. ICCABS (2016)
Jakub Klímek, Petr Skoda, Martin Necaský
Requirements on Linked Data Consumption Platform. LDOW@WWW (2016)
Jakub Klímek, Petr Skoda, Martin Necaský
LinkedPipes ETL: Evolved Linked Data Preparation. ESWC (Satellite Events) (2016)
Petr Skoda, David Hoksza
Exploration of topological torsion fingerprints. BIBM (2015)
Tomás Knap, Petr Skoda, Jakub Klímek, Martin Necaský
UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management. DATESO (2015)
David Hoksza, Petr Skoda, Milan Vorsilák, Daniel Svozil
Molpher: a software framework for systematic chemical space exploration. J. Cheminformatics 6 (1) (2014)
David Hoksza, Petr Skoda
2D Pharmacophore Query Generation. ISBRA (2014)
David Hoksza, Petr Skoda
Scaffold-based chemical space exploration. BIBM (2014)
Tomás Knap, Maria Kukhar, Bohuslav Machác, Petr Skoda, Jirí Tomes, Ján Vojt
UnifiedViews: An ETL Framework for Sustainable RDF Data Processing. ESWC (Satellite Events) (2014)
Petr Skoda, David Hoksza
Chemical space visualization using ViFrame. ICIS (2013)
Petr Skoda
Computability of Width of Submodular Partition Functions. IWOCA (2009)