Janna Hastings

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 26

Top Topics

Recent Developments

Top Venues

J. Cheminformatics

J. Biomed. Semant.

Publications

Shan Chen, Jack Gallifant, Mingye Gao, Pedro Moreira, Nikolaj Munch, Ajay Muthukkumar, Arvind Rajan, Jaya Kolluri, Amelia Fiske, Janna Hastings, Hugo J. W. L. Aerts, Brian Anthony, Leo Anthony Celi, William G. La Cava, Danielle S. Bitterman
Cross-Care: Assessing the Healthcare Implications of Pre-training Data on Language Model Bias. CoRR (2024)
Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
Ontology Pre-training for Poison Prediction. CoRR (2023)
Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
Ontology Pre-training for Poison Prediction. KI (2023)
Janna Hastings, John A. Bateman
Applied ontology: Where are we now and where are we going? Appl. Ontology 18 (1) (2023)
Marie Wosny, Livia Strasser, Janna Hastings
Human Factors Influencing the Experience of Healthcare Professionals Using Digital Tools. ICIMTH (2023)
Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. TGDK 1 (1) (2023)
Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. CoRR (2023)
Martin Glauer, Robert West, Susan Michie, Janna Hastings
ESC-Rules: Explainable, Semantically Constrained Rule Sets. NeSy (2022)
Fabian Neuhaus, Janna Hastings
Ontology development is consensus creation, not (merely) representation. Appl. Ontology 17 (4) (2022)
Simon Flügel, Martin Glauer, Fabian Neuhaus, Janna Hastings
When one Logic is Not Enough: Integrating First-order Annotations in OWL Ontologies. CoRR (2022)
Martin Glauer, Robert West, Susan Michie, Janna Hastings
ESC-Rules: Explainable, Semantically Constrained Rule Sets. CoRR (2022)
Fabian Neuhaus, Janna Hastings
Ontology Development is Consensus Creation, Not (Merely) Representation. CoRR (2022)
Guy Divita, Maryanne Sacco, Janna Hastings, Piper Ranallo
Mental Functioning Ontologies. AMIA (2021)
Simon Flügel, Anna Kleinau, Fabian Neuhaus, Martin Glauer, Janna Hastings
FOWL - An OWL to FOL Translator. JOWO (2021)
Adel Memariani, Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
Automated and Explainable Ontology Extension Based on Deep Learning: A Case Study in the Chemical Domain. CoRR (2021)
Adel Memariani, Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings
Automated and Explainable Ontology Extension based on Deep Learning: A Case Study in the Chemical Domain. DAO-XAI (2021)
Emma Norris, Janna Hastings, Marta M. Marques, Ailbhe N. Finnerty, Silje Zink, Susan Michie
Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences. J. Biomed. Semant. 12 (1) (2021)
Janna Hastings
Scientific Ontologies, Digital Curation and the Learning Knowledge Ecosystem. Qurator (2021)
Janna Hastings, Martin Glauer, Adel Memariani, Fabian Neuhaus, Till Mossakowski
Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification. J. Cheminformatics 13 (1) (2021)
Janna Hastings, Robert West, Susan Michie, Caitlin Notley, Sharon Cox
Ontologies for the Behavioural and Social Sciences: Opportunities and Challenges. ICBO (2021)
Janna Hastings, Stefan Schulz
Representing Literary Characters and their Attributes in an Ontology. JOWO (2019)
Paul Sheridan, Mikael Onsjö, Janna Hastings
The Literary Theme Ontology for Media Annotation and Information Retrieval. JOWO (2019)
Paul Sheridan, Mikael Onsjö, Janna Hastings
The Literary Theme Ontology for Media Annotation and Information Retrieval. CoRR (2019)
Janna Hastings, Gareth Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck
ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res. 44 (Database-Issue) (2016)
Yannick Djoumbou, Roman Eisner, Craig Knox, Leonid L. Chepelev, Janna Hastings, Gareth Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. J. Cheminformatics 8 (1) (2016)
Neil Swainston, Janna Hastings, Adriano Dekker, Venkatesh Muthukrishnan, John W. May, Christoph Steinbeck, Pedro Mendes
libChEBI: an API for accessing the ChEBI database. J. Cheminformatics 8 (1) (2016)
Pablo Moreno, Stephan Beisken, Bhavana Harsha, Venkatesh Muthukrishnan, Ilinca Tudose, Adriano Dekker, Stefanie Dornfeldt, Franziska Taruttis, Ivo Grosse, Janna Hastings, Steffen Neumann, Christoph Steinbeck
BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology. BMC Bioinform. 16 (2015)
Gang Fu, Colin R. Batchelor, Michel Dumontier, Janna Hastings, Egon L. Willighagen, Evan Bolton
PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. J. Cheminformatics 7 (2015)
María Herrero-Zazo, Isabel Segura-Bedmar, Janna Hastings, Paloma Martínez
DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug-Drug Interactions and Their Mechanisms. J. Chem. Inf. Model. 55 (8) (2015)
María Herrero-Zazo, Isabel Segura-Bedmar, Janna Hastings, Paloma Martínez
Application of Domain Ontologies to Natural Language Processing: A Case Study for Drug-Drug Interactions. Int. J. Inf. Retr. Res. 5 (3) (2015)
Alexander García Castro, Janna Hastings, Robert Stevens, Erich Weichselgartner
Digital Scholarship and Open Science in Psychology and the Behavioral Sciences (Dagstuhl Perpectives Workshop 15302). Dagstuhl Reports 5 (7) (2015)
Janna Hastings, Nina Jeliazkova, Gareth Owen, Georgia Tsiliki, Cristian R. Munteanu, Christoph Steinbeck, Egon L. Willighagen
eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment. J. Biomed. Semant. 6 (2015)
Janna Hastings, Neil Swainston, Venkatesh Muthukrishnan, Namrata Kale, Adriano Dekker, Gareth Owen, Steve Turner, Pedro Mendes, Christoph Steinbeck
ChEBI for systems biology and metabolic modelling. ICBO (2015)
Janna Hastings, Gwen A. Frishkoff, Barry Smith, Mark Jensen, Russell A. Poldrack, Jane Lomax, Anita E. Bandrowski, Fahim T. Imam, Jessica A. Turner, Maryann E. Martone
Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Frontiers Neuroinformatics 8 (2014)
Janna Hastings, Andy Brass, Colin Caine, Caroline Jay, Robert Stevens
Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference. J. Biomed. Semant. 5 (2014)
Nina Jeliazkova, Philip Doganis, Bengt Fadeel, Roland Grafstrom, Janna Hastings, Vedrin Jeliazkov, Pekka Kohonen, Cristian R. Munteanu, Haralambos Sarimveis, Bart Smeets, Georgia Tsiliki, David Vorgrimmler, Egon L. Willighagen
The first eNanoMapper prototype: A substance database to support safe-by-design. BIBM (2014)
Kenneth Haug, Reza M. Salek, Pablo Conesa, Janna Hastings, Paula de Matos, Mark Rijnbeek, Tejasvi Mahendraker, Mark Williams, Steffen Neumann, Philippe Rocca-Serra, Eamonn Maguire, Alejandra N. González-Beltrán, Susanna-Assunta Sansone, Julian L. Griffin, Christoph Steinbeck
MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res. 41 (Database-Issue) (2013)
João D. Ferreira, Janna Hastings, Francisco M. Couto
Exploiting disjointness axioms to improve semantic similarity measures. Bioinform. 29 (21) (2013)
Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Susanna-Assunta Sansone, Christoph Steinbeck
The MetaboLights repository: curation challenges in metabolomics. Database J. Biol. Databases Curation 2013 (2013)
Ilinca Tudose, Janna Hastings, Venkatesh Muthukrishnan, Gareth Owen, Steve Turner, Adriano Dekker, Namrata Kale, Marcus Ennis, Christoph Steinbeck
OntoQuery: easy-to-use web-based OWL querying. Bioinform. 29 (22) (2013)
Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Bhavana Harsha, Namrata Kale, Venkatesh Muthukrishnan, Gareth Owen, Steve Turner, Mark Williams, Christoph Steinbeck
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res. 41 (Database-Issue) (2013)
Jon Chambers, Mark Davies, Anna Gaulton, Anne Hersey, Sameer Velankar, Robert Petryszak, Janna Hastings, Louisa J. Bellis, Shaun McGlinchey, John P. Overington
UniChem: a unified chemical structure cross-referencing and identifier tracking system. J. Cheminformatics 5 (2013)
Janna Hastings, Colin R. Batchelor, Mitsuhiro Okada
Shape Perception in Chemistry. SHAPES (2013)
María Herrero-Zazo, Janna Hastings, Isabel Segura-Bedmar, Samuel Croset, Paloma Martínez, Christoph Steinbeck
An Ontology for Drug-drug Interactions. SWAT4LS (2013)
Andrew Dalke, Janna Hastings
FMCS: a novel algorithm for the multiple MCS problem. J. Cheminformatics 5 (S-1) (2013)
Egon L. Willighagen, Andra Waagmeester, Ola Spjuth, Peter Ansell, Antony J. Williams, Valery Tkachenko, Janna Hastings, Bin Chen, David J. Wild
The ChEMBL database as linked open data. J. Cheminformatics 5 (2013)
Janna Hastings, Pablo Conesa, Adriano Dekker, Marcus Ennis, Kenneth Haug, Kalai Vanii Jayaseelan, Namrata Kale, Tejasvi Mahendraker, Pablo Moreno, Venkatesh Muthukrishnan, Gareth Owen, Reza M. Salek, Steve Turner, Christoph Steinbeck
Expanding natural product chemistry resources at the EBI. J. Cheminformatics 5 (S-1) (2013)
Janna Hastings, Colin R. Batchelor, Fabian Neuhaus, Christoph Steinbeck
What's in an 'is about' link? Chemical diagrams and the Information Artifact Ontology CoRR (2012)
Jörg K. Wegner, Aaron D. Sterling, Rajarshi Guha, Andreas Bender, Jean-Loup Faulon, Janna Hastings, Noel M. O'Boyle, John P. Overington, Herman van Vlijmen, Egon L. Willighagen
Cheminformatics. Commun. ACM 55 (11) (2012)
Janna Hastings, Despoina Magka, Colin R. Batchelor, Lian Duan, Robert Stevens, Marcus Ennis, Christoph Steinbeck
Structure-based classification and ontology in chemistry. J. Cheminformatics 4 (2012)
Janna Hastings, Nicolas Le Novère, Werner Ceusters, Kevin Mulligan, Barry Smith
Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies. ICBO (2012)
Oliver Kutz, Janna Hastings, Till Mossakowski
Modelling Highly Symmetrical Molecules: Linking Ontologies and Graphs. AIMSA (2012)
Lian Duan, Janna Hastings, Paula de Matos, Marcus Ennis, Christoph Steinbeck
Structured chemical class definitions and automated matching for chemical ontology evolution. J. Cheminformatics 4 (S-1) (2012)
André Queiroz de Andrade, Ward Blondé, Janna Hastings, Stefan Schulz
Process attributes in bio-ontologies. BMC Bioinform. 13 (2012)
Colin R. Batchelor, Janna Hastings
Waves and fields in bio-ontologies. ICBO (2012)
Leonid L. Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier
Self-organizing ontology of biochemically relevant small molecules. BMC Bioinform. 13 (2012)
Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Venkatesh Muthukrishnan, Steve Turner, Gareth Owen, Christoph Steinbeck
Modular Extensions to the ChEBI Ontology. ICBO (2012)
Janna Hastings, Nico Adams, Marcus Ennis, Duncan Hull, Christoph Steinbeck
Chemical ontologies: what are they, what are they for and what are the challenges. J. Cheminformatics 3 (S-1) (2011)
Ying Yan, Janna Hastings, Jee-Hyub Kim, Stefan Schulz, Christoph Steinbeck, Dietrich Rebholz-Schuhmann
Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules. ICBO (2011)
Janna Hastings, Colin R. Batchelor, Fabian Neuhaus, Christoph Steinbeck
What's in an 'is about' Link? Chemical Diagrams and the Information Artifact Ontology. ICBO (2011)
Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Kenneth Haug, Zara Josephs, Gareth Owen, Steve Turner, Christoph Steinbeck
Recent Developments in the ChEBI Ontology. ICBO (2011)
Janna Hastings, Colin R. Batchelor, Stefan Schulz
Parts and Wholes, Shapes and Holes in Living Beings. SHAPES (2011)
Janna Hastings, Ludger Jansen, Christoph Steinbeck, Stefan Schulz
Modelling Threshold Phenomena in OWL: Metabolite Concentrations as Evidence For Disorders. OWLED (2011)
Martin Boeker, Ilinca Tudose, Janna Hastings, Daniel Schober, Stefan Schulz
Unintended consequences of existential quantifications in biomedical ontologies. BMC Bioinform. 12 (2011)
Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan
Dispositions and Processes in the Emotion Ontology. ICBO (2011)
Martin Boeker, Janna Hastings, Daniel Schober, Stefan Schulz
A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns. OWLED (2011)
Oliver Kutz, Till Mossakowski, Janna Hastings, Alexander García Castro, Aleksandra Sojic
Hyperontology for the Biomedical Ontologist: A Sketch and Some Examples. ICBO (2011)
Janna Hastings, Colin R. Batchelor, Christoph Steinbeck, Stefan Schulz
Modularization Requirements in Bio-Ontologies: A Case Study of ChEbi. WoMO (2011)
Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan
The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences. CONTEXT (2011)
Paula de Matos, Rafael Alcántara, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Inmaculada Spiteri, Steve Turner, Christoph Steinbeck
Chemical Entities of Biological Interest: an update. Nucleic Acids Res. 38 (Database-Issue) (2010)
Janna Hastings, Colin R. Batchelor, Christoph Steinbeck, Stefan Schulz
What are chemical structures and their relations? FOIS (2010)
Janna Hastings, Michel Dumontier, Duncan Hull, Matthew Horridge, Christoph Steinbeck, Robert Stevens, Ulrike Sattler, Tertia Hörne, Katarina Britz
Representing Chemicals Using OWL, Description Graphs and Rules. OWLED (2010)
Colin R. Batchelor, Janna Hastings, Christoph Steinbeck
Ontological dependence, dispositions and institutional reality in chemistry. FOIS (2010)
Paula de Matos, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Steve Turner, Christoph Steinbeck
ChEBI: a chemistry ontology and database. J. Cheminformatics 2 (S-1) (2010)
Nico Adams, Paula de Matos, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Duncan Hull, Zara Josephs, Pablo Moreno, Steve Turner, Christoph Steinbeck
Semantic access to chemistry data with the ChEBI ontology and web services. SWAT4LS (2009)
Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Janna Hastings, Martin Zbinden, Alan McNaught, Rafael Alcántara, Michael Darsow, Mickaël Guedj, Michael Ashburner
ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36 (Database-Issue) (2008)
Janna Hastings, Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Christoph Steinbeck
The ChEBI Ontology: An Ontology for Chemistry within a Biological Context. SWAT4LS (2008)