Neil Swainston

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 7

Top Topics

Computational Model

Gene Expression

Top Venues

J. Cheminformatics

Nucleic Acids Res.

BMC Syst. Biol.

Publications

Yash Khemchandani, Stephen O'Hagan, Soumitra Samanta, Neil Swainston, Timothy J. Roberts, Danushka Bollegala, Douglas B. Kell
DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach. J. Cheminformatics 12 (1) (2020)
Pablo Carbonell, Jerry Wong, Neil Swainston, Eriko Takano, Nicholas J. Turner, Nigel S. Scrutton, Douglas B. Kell, Rainer Breitling, Jean-Loup Faulon
Selenzyme: enzyme selection tool for pathway design. Bioinform. 34 (12) (2018)
Neil Swainston, Mark Dunstan, Adrian J. Jervis, Christopher J. Robinson, Pablo Carbonell, Alan R. Williams, Jean-Loup Faulon, Nigel S. Scrutton, Douglas B. Kell
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts. Bioinform. 34 (13) (2018)
Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell
CodonGenie: optimised ambiguous codon design tools. PeerJ Prepr. 5 (2017)
Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell
CodonGenie: optimised ambiguous codon design tools. PeerJ Comput. Sci. 3 (2017)
Janna Hastings, Gareth Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck
ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res. 44 (Database-Issue) (2016)
Neil Swainston, Janna Hastings, Adriano Dekker, Venkatesh Muthukrishnan, John W. May, Christoph Steinbeck, Pedro Mendes
libChEBI: an API for accessing the ChEBI database. J. Cheminformatics 8 (1) (2016)
Janna Hastings, Neil Swainston, Venkatesh Muthukrishnan, Namrata Kale, Adriano Dekker, Gareth Owen, Steve Turner, Pedro Mendes, Christoph Steinbeck
ChEBI for systems biology and metabolic modelling. ICBO (2015)
Neil Swainston, Andrew Currin, Philip J. Day, Douglas B. Kell
GeneGenie: optimized oligomer design for directed evolution. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7 (2013)
Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston
Improving metabolic flux predictions using absolute gene expression data. BMC Syst. Biol. 6 (2012)
Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Syst. Biol. 5 (2011)
Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. J. Integr. Bioinform. 8 (2) (2011)
Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes
Further developments towards a genome-scale metabolic model of yeast. BMC Syst. Biol. 4 (2010)
Karin Radrich, Yoshimasa Tsuruoka, Paul D. Dobson, Albert Gevorgyan, Neil Swainston, Gino Baart, Jean-Marc Schwartz
Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. BMC Syst. Biol. 4 (2010)
Peter Li, Joseph O. Dada, Daniel Jameson, Irena Spasic, Neil Swainston, Kathleen Carroll, Warwick B. Dunn, Farid Khan, Naglis Malys, Hanan L. Messiha, Evangelos Simeonidis, Dieter Weichart, Catherine Winder, Jill Wishart, David S. Broomhead, Carole A. Goble, Simon J. Gaskell, Douglas B. Kell, Hans V. Westerhoff, Pedro Mendes, Norman W. Paton
Systematic integration of experimental data and models in systems biology. BMC Bioinform. 11 (2010)
Neil Swainston, Daniel Jameson, Peter Li, Irena Spasic, Pedro Mendes, Norman W. Paton
Integrative Information Management for Systems Biology. DILS (2010)
Kieran Smallbone, Evangelos Simeonidis, Neil Swainston, Pedro Mendes
Towards a genome-scale kinetic model of cellular metabolism. BMC Syst. Biol. 4 (2010)
Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton
Information management for high content live cell imaging. BMC Bioinform. 10 (2009)
Neil Swainston, Pedro Mendes
libAnnotationSBML: a library for exploiting SBML annotations. Bioinform. 25 (17) (2009)
Neil Swainston, Jennifer A. Siepen, Andrew R. Jones, Sarah R. Hart, Henning Hermjakob, Philip Jones, Simon J. Hubbard
Pride Wizard: generation of standards compliant quantitative proteomics data. BMC Syst. Biol. 1 (S-1) (2007)
Kevin L. Garwood, Christopher Garwood, Cornelia Hedeler, Tony Griffiths, Neil Swainston, Stephen G. Oliver, Norman W. Paton
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. BMC Bioinform. 7 (2006)