Jennifer L. Reed

Publication Activity (10 Years)

Years Active: 2007-2020
Publications (10 Years): 5

Top Topics

Stochastic Sampling

Community Members

Experimental Data

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Publications

Jessica L. Howe, Jennifer L. Reed, Katharine T. Adams, Cara Elsholz, Erin M. Augustine, Andrea T. Cruz, Cynthia Mollen, Michelle L. Pickett, Sara Schmidt, Kristin Stukus, Raj M. Ratwani, Monika K. Goyal
Workflow Analysis Driven Recommendations for Integration of Electronically-Enhanced Sexually Transmitted Infection Screening Tools in Pediatric Emergency Departments. J. Medical Syst. 44 (12) (2020)
Wai Kit Ong, Dylan K. Courtney, Shu Pan, Ramon Bonela Andrade, Patricia J. Kiley, Brian F. Pfleger, Jennifer L. Reed
Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4. PLoS Comput. Biol. 16 (8) (2020)
Mingyuan Tian, Jennifer L. Reed
Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis. Bioinform. 34 (22) (2018)
Matthew R. Long, Jennifer L. Reed
Improving flux predictions by integrating data from multiple strains. Bioinform. 33 (6) (2017)
Joshua J. Hamilton, Montserrat Calixto Contreras, Jennifer L. Reed
Transfer in a Methanogenic, Syntrophic Community. PLoS Comput. Biol. 11 (7) (2015)
Wai Ong, Trang T. Vu, Klaus N. Lovendahl, Jenna M. Llull, Margrethe H. Serres, Margaret F. Romine, Jennifer L. Reed
Comparisons of Shewanella strains based on genome annotations, modeling, and experiments. BMC Syst. Biol. 8 (2014)
David J. Baumler, Bing Ma, Jennifer L. Reed, Nicole T. Perna
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria. BMC Syst. Biol. 7 (2013)
Cameron Cotten, Jennifer L. Reed
Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models. BMC Bioinform. 14 (2013)
Jennifer L. Reed
Shrinking the Metabolic Solution Space Using Experimental Datasets. PLoS Comput. Biol. 8 (8) (2012)
Trang T. Vu, Sergey M. Stolyar, Grigoriy E. Pinchuk, Eric A. Hill, Leo A. Kucek, Roslyn N. Brown, Mary S. Lipton, Andrei Osterman, Jim K. Fredrickson, Allan E. Konopka, Alexander S. Beliaev, Jennifer L. Reed
sp. ATCC 51142. PLoS Comput. Biol. 8 (4) (2012)
Jan Schellenberger, Daniel C. Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A. Scott, Jennifer L. Reed, Andrei Osterman, Bernhard Ø. Palsson
C isotope tracing experiments using Monte Carlo sampling. BMC Syst. Biol. 6 (2012)
Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Syst. Biol. 5 (2011)
David J. Baumler, Roman G. Peplinski, Jennifer L. Reed, Jeremy D. Glasner, Nicole T. Perna
The evolution of metabolic networks of E. coli. BMC Syst. Biol. 5 (2011)
Saheed Imam, Safak Yilmaz, Ugur Sohmen, Alexander S. Gorzalski, Jennifer L. Reed, Daniel R. Noguera, Timothy J. Donohue
iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network. BMC Syst. Biol. 5 (2011)
Dipak Barua, Joonhoon Kim, Jennifer L. Reed
Force) for Refining Metabolic and Regulatory Models. PLoS Comput. Biol. 6 (10) (2010)
Grigoriy E. Pinchuk, Eric A. Hill, Oleg V. Geydebrekht, Jessica De Ingeniis, Xiaolin Zhang, Andrei Osterman, James H. Scott, Samantha B. Reed, Margaret F. Romine, Allan E. Konopka, Alexander S. Beliaev, Jim K. Fredrickson, Jennifer L. Reed
MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation. PLoS Comput. Biol. 6 (6) (2010)
Joonhoon Kim, Jennifer L. Reed
OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains. BMC Syst. Biol. 4 (2010)
Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Bernhard Ø. Palsson, Simon Daefler
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction. BMC Syst. Biol. 3 (2009)
Osbaldo Resendis-Antonio, Jennifer L. Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Ø. Palsson
. PLoS Comput. Biol. 3 (10) (2007)