Nicole T. Perna

Publication Activity (10 Years)

Years Active: 2003-2013
Publications (10 Years): 0

Top Topics

Modeling Framework

Mathematical Modeling

Top Venues

BMC Syst. Biol.

Publications

David J. Baumler, Bing Ma, Jennifer L. Reed, Nicole T. Perna
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria. BMC Syst. Biol. 7 (2013)
John P. Hamilton, Eric C. Neeno-Eckwall, Bishwo N. Adhikari, Nicole T. Perna, Ned Tisserat, Jan Leach, C. André Lévesque, C. Robin Buell
The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes. Database J. Biol. Databases Curation 2011 (2011)
David J. Baumler, Roman G. Peplinski, Jennifer L. Reed, Jeremy D. Glasner, Nicole T. Perna
The evolution of metabolic networks of E. coli. BMC Syst. Biol. 5 (2011)
Yann S. Dufour, Gary E. Wesenberg, Andrew J. Tritt, Jeremy D. Glasner, Nicole T. Perna, Julie C. Mitchell, Timothy J. Donohue
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Sam Zaremba, Mila Ramos-Santacruz, Thomas Hampton, Panna Shetty, Joel Fedorko, Jon Whitmore, John M. Greene, Nicole T. Perna, Jeremy D. Glasner, Guy Plunkett III, Matthew Shaker, David Pot
Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. BMC Bioinform. 10 (2009)
Anna I. Rissman, Bob Mau, Bryan S. Biehl, Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna
Reordering contigs of draft genomes using the Mauve Aligner. Bioinform. 25 (16) (2009)
Jeremy D. Glasner, Guy Plunkett III, Bradley D. Anderson, David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Thomas Hampton, Paul Liss, Michael Rusch, Matthew Shaker, Lorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Res. 36 (Database-Issue) (2008)
Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett III, Eric L. Cabot, Aaron E. Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, Nicole T. Perna
ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. Nucleic Acids Res. 34 (Database-Issue) (2006)
Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna
Procrastination Leads to Efficient Filtration for Local Multiple Alignment. WABI (2006)
Aaron E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna
GRIL: genome rearrangement and inversion locator. Bioinform. 20 (1) (2004)
Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna
Multiple Alignment of Rearranged Genomes. CSB (2004)
Bob Mau, Aaron E. Darling, Nicole T. Perna
Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes. Comparative Genomics (2004)
Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron E. Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael K. Gilson, Bryan S. Biehl, Frederick R. Blattner, Nicole T. Perna
ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 (1) (2003)