Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.
Sam ZarembaMila Ramos-SantacruzThomas HamptonPanna ShettyJoel FedorkoJon WhitmoreJohn M. GreeneNicole T. PernaJeremy D. GlasnerGuy Plunkett IIIMatthew ShakerDavid PotPublished in: BMC Bioinform. (2009)
Keyphrases
- text mining
- biomedical literature
- natural language processing
- knowledge base
- scientific literature
- wordnet
- information extraction
- computational biology
- knowledge representation
- protein interaction
- computational linguistics
- text documents
- protein protein interactions
- semantic network
- information retrieval
- machine learning
- named entities
- biological knowledge
- biological processes
- knowledge discovery
- semantic relations
- document clustering
- natural language
- artificial intelligence
- data mining
- textual data
- data sets