Julie C. Mitchell

Publication Activity (10 Years)

Years Active: 1996-2022
Publications (10 Years): 7

Top Topics

Protein Structure

Pairwise Distances

Top Venues

J. Chem. Inf. Model.

Database J. Biol. Databases Curation

Publications

Shih-Hsien Liu, Zhousheng Xiao, Sambit K. Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles, Loukas Petridis
Identification of Small-Molecule Inhibitors of Fibroblast Growth Factor 23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho. J. Chem. Inf. Model. 62 (15) (2022)
Russell B. Davidson, Jess Woods, T. Chad Effler, Mathialakan Thavappiragasam, Julie C. Mitchell, Jerry M. Parks, Ada Sedova
OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances. Bioinform. 38 (12) (2022)
Xiaolei Zhu, Ling Liu, Jingjing He, Ting Fang, Yi Xiong, Julie C. Mitchell
iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots. BMC Bioinform. 21 (1) (2020)
Atanu Acharya, Rupesh Agarwal, Matthew B. Baker, Jérôme Baudry, Debsindhu Bhowmik, Swen Böhm, Kendall G. Byler, Sam Yen-Chi Chen, Leighton Coates, Connor J. Cooper, Omar Demerdash, Isabella Daidone, John D. Eblen, Sally R. Ellingson, Stefano Forli, Jens Glaser, James C. Gumbart, John Gunnels, Oscar R. Hernandez, Stephan Irle, D. W. Kneller, A. Kovalevsky, Jeffrey M. Larkin, Travis J. Lawrence, Scott LeGrand, Shih-Hsien Liu, Julie C. Mitchell, Gilchan Park, Jerry M. Parks, Anna Pavlova, Loukas Petridis, Duncan Poole, Line Pouchard, Arvind Ramanathan, David M. Rogers, Diogo Santos-Martins, Aaron Scheinberg, Ada Sedova, Y. Shen, Jeremy C. Smith, Micholas Dean Smith, Carlos Soto, Aristides Tsaris, Mathialakan Thavappiragasam, Andreas F. Tillack, Josh Vincent Vermaas, Van Quan Vuong, Junqi Yin, Shinjae Yoo, Mai Zahran, Laura Zanetti Polzi
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. J. Chem. Inf. Model. 60 (12) (2020)
Huikun Zhang, Spencer S. Ericksen, Ching-pei Lee, Gene E. Ananiev, Nathan Wlodarchak, Peng Yu, Julie C. Mitchell, Anthony Gitter, Stephen J. Wright, F. Michael Hoffmann, Scott A. Wildman, Michael A. Newton
Predicting kinase inhibitors using bioactivity matrix derived informer sets. PLoS Comput. Biol. 15 (8) (2019)
Ling Liu, Yi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C. Mitchell, Xiaolei Zhu
dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions. Database J. Biol. Databases Curation 2018 (2018)
Shravan Sukumar, Xiaolei Zhu, Spencer S. Ericksen, Julie C. Mitchell
DBSI server: DNA binding site identifier. Bioinform. 32 (18) (2016)
Raman Lall, Timothy J. Donohue, Simeone Marino, Julie C. Mitchell
Optimizing ethanol production selectivity. Math. Comput. Model. 53 (7-8) (2011)
Yann S. Dufour, Gary E. Wesenberg, Andrew J. Tritt, Jeremy D. Glasner, Nicole T. Perna, Julie C. Mitchell, Timothy J. Donohue
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Anna Yershova, Swati Jain, Steven M. LaValle, Julie C. Mitchell
(3) Using the Hopf Fibration. Int. J. Robotics Res. 29 (7) (2010)
Omar N. A. Demerdash, Michael D. Daily, Julie C. Mitchell
Structure-Based Predictive Models for Allosteric Hot Spots. PLoS Comput. Biol. 5 (10) (2009)
David Dynerman, Erick Butzlaff, Julie C. Mitchell
CUSA and CUDE: GPU-Accelerated Methods for Estimating Solvent Accessible Surface Area and Desolvation. J. Comput. Biol. 16 (4) (2009)
Steven J. Darnell, Laura H. LeGault, Julie C. Mitchell
KFC Server: interactive forecasting of protein interaction hot spots. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Anna Yershova, Steven M. LaValle, Julie C. Mitchell
(3) Using the Hopf Fibration. WAFR (2008)
Julie C. Mitchell
Sampling Rotation Groups by Successive Orthogonal Images. SIAM J. Sci. Comput. 30 (1) (2008)
Ryan M. Bannen, Vanitha Suresh, George N. Phillips Jr., Stephen J. Wright, Julie C. Mitchell
Optimal design of thermally stable proteins. Bioinform. 24 (20) (2008)
Roummel F. Marcia, Julie C. Mitchell, Stephen J. Wright
Global optimization in protein docking using clustering, underestimation and semidefinite programming. Optim. Methods Softw. 22 (5) (2007)
Raman Lall, Julie C. Mitchell
. Bioinform. 23 (20) (2007)
Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen
Multi-funnel optimization using Gaussian underestimation. J. Glob. Optim. 39 (1) (2007)
Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen
Iterative Convex Quadratic Approximation for Global Optimization in Protein Docking. Comput. Optim. Appl. 32 (3) (2005)
Julie C. Mitchell, J. Ben Rosen, Andrew T. Phillips, Lynn F. Ten Eyck
Coupled optimization in protein docking. RECOMB (1999)
Carlos Alberto Montanari, M. S. Tute, A. E. Beezer, Julie C. Mitchell
Determination of receptor-bound drug conformations by QSAR using flexible fitting to derive a molecular similarity index. J. Comput. Aided Mol. Des. 10 (1) (1996)