Russell B. Davidson

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 6

Top Topics

Pairwise Distances

Protein Structure

Solvent Accessibility

Molecular Dynamics

Top Venues

J. Chem. Inf. Model.

IPDPS Workshops

Publications

Russell B. Davidson, Mark Coletti, Mu Gao, Bryan Piatkowski, Avinash Sreedasyam, Farhan Quadir, David J. Weston, Jeremy Schmutz, Jianlin Cheng, Jeffrey Skolnick, Jerry M. Parks, Ada Sedova
and proteome-scale annotation. Bioinform. 39 (8) (2023)
Darren J. Hsu, Russell B. Davidson, Ada Sedova, Jens Glaser
tinyIFD: A High-Throughput Binding Pose Refinement Workflow Through Induced-Fit Ligand Docking. J. Chem. Inf. Model. 63 (11) (2023)
Mu Gao, Mark Coletti, Russell B. Davidson, Ryan Prout, Subil Abraham, Benjamín Hernández, Ada Sedova
Proteome-scale Deployment of Protein Structure Prediction Workflows on the Summit Supercomputer. IPDPS Workshops (2022)
Russell B. Davidson, Jess Woods, T. Chad Effler, Mathialakan Thavappiragasam, Julie C. Mitchell, Jerry M. Parks, Ada Sedova
OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances. Bioinform. 38 (12) (2022)
Russell B. Davidson, Mathialakan Thavappiragasam, T. Chad Effler, Jess Woods, Dwayne A. Elias, Jerry M. Parks, Ada Sedova
Modeling protein structures from predicted contacts with modern molecular dynamics potentials: accuracy, sensitivity, and refinement. BCB (2021)
Russell B. Davidson, Josie Hendrix, Brian J. Geiss, Martin McCullagh
Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations. PLoS Comput. Biol. 14 (4) (2018)