Louxin Zhang

ORCID

Publication Activity (10 Years)

Years Active: 1991-2024
Publications (10 Years): 35

Top Venues

Publications

Laurent Bulteau, Louxin Zhang
The tree-child network inference problem for line trees and the shortest common supersequence problem for permutation strings. J. Comput. Syst. Sci. 144 (2024)
Elahe Khayatian, Gabriel Valiente, Louxin Zhang
-Robinson-Foulds Dissimilarity Measures for Comparison of Labeled Trees. J. Comput. Biol. 31 (4) (2024)
Yufeng Wu, Louxin Zhang
Computing the Bounds of the Number of Reticulations in a Tree-Child Network That Displays a Set of Trees. J. Comput. Biol. 31 (4) (2024)
Cédric Chauve, Caroline Colijn, Louxin Zhang
A Vector Representation for Phylogenetic Trees. CoRR (2024)
Elahe Khayatian, Gabriel Valiente, Louxin Zhang
The K-Robinson Foulds Measures for Labeled Trees. RECOMB-CG (2023)
Yufeng Wu, Louxin Zhang
Bounding the Number of Reticulations in a Tree-Child Network that Displays a Set of Trees. RECOMB-CG (2023)
Louxin Zhang
The Sackin Index of Simplex Networks. RECOMB-CG (2022)
Yurui Chen, Louxin Zhang
How much can deep learning improve prediction of the responses to drugs in cancer cell lines? Briefings Bioinform. 23 (1) (2022)
Michael Fuchs, Guan-Ru Yu, Louxin Zhang
Asymptotic enumeration and distributional properties of galled networks. J. Comb. Theory, Ser. A 189 (2022)
Jinyu Chen, Louxin Zhang
A survey and systematic assessment of computational methods for drug response prediction. Briefings Bioinform. 22 (1) (2021)
Rohan B. H. Williams, Louxin Zhang
Introduction to the Special Issue of the 18th Annual International RECOMB Satellite Workshop on Comparative Genomics. J. Bioinform. Comput. Biol. 19 (6) (2021)
Michael Fuchs, Guan-Ru Yu, Louxin Zhang
On the asymptotic growth of the number of tree-child networks. Eur. J. Comb. 93 (2021)
Katharina Jahn, Niko Beerenwinkel, Louxin Zhang
The Bourque distances for mutation trees of cancers. Algorithms Mol. Biol. 16 (1) (2021)
Louxin Zhang, Shaoliang Peng, Yi-Ping Phoebe Chen, David Sankoff, Guoliang Li, Hong-Yu Zhang
Guest Editorial for the 17th Asia Pacific Bioinformatics Conference. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Andreas D. M. Gunawan, Jeyaram Rathin, Louxin Zhang
Counting and enumerating galled networks. Discret. Appl. Math. 283 (2020)
Louxin Zhang
Recent Progresses in the Combinatorial and Algorithmic Study of Rooted Phylogenetic Networks. WALCOM (2020)
Katharina Jahn, Niko Beerenwinkel, Louxin Zhang
The Bourque Distances for Mutation Trees of Cancers. WABI (2020)
Gabriel Cardona, Louxin Zhang
Counting and enumerating tree-child networks and their subclasses. J. Comput. Syst. Sci. 114 (2020)
Louxin Zhang
Generating Normal Networks via Leaf Insertion and Nearest Neighbor Interchange. CoRR (2019)
Andreas D. M. Gunawan, Hongwei Yan, Louxin Zhang
Compression of Phylogenetic Networks and Algorithm for the Tree Containment Problem. J. Comput. Biol. 26 (3) (2019)
Rudi Alberts, Jinyu Chen, Louxin Zhang
ZDOG: zooming in on dominating genes with mutations in cancer pathways. BMC Bioinform. 20 (1) (2019)
Louxin Zhang
Generating normal networks via leaf insertion and nearest neighbor interchange. BMC Bioinform. (20) (2019)
Andreas D. M. Gunawan, Bingxin Lu, Louxin Zhang
Fast Methods for Solving the Cluster Containment Problem for Phylogenetic Networks. CoRR (2018)
Yi-Hua Yang, Chung-Shou Liao, Xin Han, Louxin Zhang
Online buffer management for transmitting packets with processing cycles. Theor. Comput. Sci. 723 (2018)
Andreas D. M. Gunawan, Hongwei Yan, Louxin Zhang
The compressions of reticulation-visible networks are tree-child. CoRR (2018)
Philippe Gambette, Andreas D. M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang
Solving the tree containment problem in linear time for nearly stable phylogenetic networks. Discret. Appl. Math. 246 (2018)
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34 (21) (2018)
Hongwei Yan, Andreas D. M. Gunawan, Louxin Zhang
S-Cluster++: a fast program for solving the cluster containment problem for phylogenetic networks. Bioinform. 34 (17) (2018)
Bingxin Lu, Louxin Zhang, Hon Wai Leong
A program to compute the soft Robinson-Foulds distance between phylogenetic networks. BMC Genom. 18 (S2) (2017)
Andreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang
A decomposition theorem and two algorithms for reticulation-visible networks. Inf. Comput. 252 (2017)
Yu Zheng, Louxin Zhang
Reconciliation With Nonbinary Gene Trees Revisited. J. ACM 64 (4) (2017)
Andreas D. M. Gunawan, Bingxin Lu, Louxin Zhang
A program for verification of phylogenetic network models. Bioinform. 32 (17) (2016)
Andreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang
Locating a Tree in a Reticulation-Visible Network in Cubic Time. RECOMB (2016)
Louxin Zhang
On Tree-Based Phylogenetic Networks. J. Comput. Biol. 23 (7) (2016)
Andreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang
Locating a Phylogenetic Tree in a Reticulation-Visible Network in Quadratic Time. CoRR (2016)
Philippe Gambette, Andreas D. M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang
Solving the Tree Containment Problem for Genetically Stable Networks in Quadratic Time. IWOCA (2015)
Philippe Gambette, Andreas D. M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang
Locating a Tree in a Phylogenetic Network in Quadratic Time. RECOMB (2015)
Andreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang
Stability Implies Computational Tractability: Locating a Tree in a Stable Network is Easy. CoRR (2015)
Andreas D. M. Gunawan, Louxin Zhang
Bounding the Size of a Network Defined By Visibility Property. CoRR (2015)
Philippe Gambette, Andreas D. M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang
Locating a Tree in a Phylogenetic Network in Quadratic Time. CoRR (2015)
Yu Zheng, Louxin Zhang
Reconciliation with Non-binary Gene Trees Revisited. RECOMB (2014)
Yu Zheng, Louxin Zhang
Effect of Incomplete Lineage SortingOn Tree-Reconciliation-Based Inferenceof Gene Duplication. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (3) (2014)
Yu Zheng, Louxin Zhang
Are the Duplication Cost and Robinson-Foulds Distance Equivalent? J. Comput. Biol. 21 (8) (2014)
Ngoc Hieu Tran, Kwok Pui Choi, Louxin Zhang
Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data - (Extended Abstract). RECOMB (2013)
Yu Zheng, Louxin Zhang
Effect of Incomplete Lineage Sorting on Tree-Reconciliation-Based Inference of Gene Duplication. ISBRA (2013)
Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang
Maximum Likelihood Inference of the Evolutionary History of a PPI Network from the Duplication History of Its Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Sebastian Maurer-Stroh, He Gao, Hao Han, Lies Baeten, Joost Schymkowitz, Frederic Rousseau, Louxin Zhang, Frank Eisenhaber
Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. J. Bioinform. Comput. Biol. 11 (1) (2013)
Yu Zheng, Taoyang Wu, Louxin Zhang
A Linear-Time Algorithm for Reconciliation of Non-binary Gene Tree and Binary Species Tree. COCOA (2013)
Yu Zheng, Louxin Zhang
A Tool for Non-binary Tree Reconciliation. ISBRA (2013)
Xin Chen, Qiong Wu, Ruimin Sun, Louxin Zhang
Two combinatorial optimization problems for SNP discovery using base-specific cleavage and mass spectrometry. BMC Syst. Biol. 6 (S-2) (2012)
Minmei Hou, Louxin Zhang, Robert S. Harris
Alignment seeding strategies using contiguous pyrimidine purine matches. BCB (2012)
Chung-Shou Liao, Louxin Zhang
Approximating the Spanning k-Tree forest Problem. Int. J. Found. Comput. Sci. 23 (7) (2012)
Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang
Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History. ISBRA (2012)
Bin Fu, Louxin Zhang
A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance. ISBRA (2011)
Louxin Zhang
From Gene Trees to Species Trees II: Species Tree Inference by Minimizing Deep Coalescence Events. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Louxin Zhang, Yen Kaow Ng, Taoyang Wu, Yu Zheng
Network model and efficient method for detecting relative duplications or horizontal gene transfers. ICCABS (2011)
Bin Ma, Louxin Zhang
Efficient estimation of the accuracy of the maximum likelihood method for ancestral state reconstruction. J. Comb. Optim. 21 (4) (2011)
Taoyang Wu, Louxin Zhang
Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree. BMC Bioinform. 12 (S-9) (2011)
Louxin Zhang, Yun Cui
An Efficient Method for DNA-Based Species Assignment via Gene Tree and Species Tree Reconciliation. WABI (2010)
Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller
CAGE: Combinatorial Analysis of Gene-Cluster Evolution. J. Comput. Biol. 17 (9) (2010)
Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller
Inferring the Recent Duplication History of a Gene Cluster. RECOMB-CG (2009)
Chung-Shou Liao, Louxin Zhang
Approximating the Spanning k-Tree Forest Problem. FAW (2009)
Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Louxin Zhang, Webb Miller, David Haussler
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications. J. Comput. Biol. 15 (8) (2008)
Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang
A PTAS for the k-Consensus Structures Problem Under Euclidean Squared Distance. FAW (2008)
Jialiang Yang, Louxin Zhang
Run Probabilities of Seed-Like Patterns and Identifying Good Transition Seeds. J. Comput. Biol. 15 (10) (2008)
Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang
-Consensus Structures Problem Under Squared Euclidean Distance. Algorithms 1 (2) (2008)
Jialiang Yang, Louxin Zhang
Run Probability of High-Order Seed Patterns and its Applications to Finding Good Transition Seeds. APBC (2008)
C. Thach Nguyen, Jian Shen, Minmei Hou, Li Sheng, Webb Miller, Louxin Zhang
Approximating the Spanning Star Forest Problem and Its Application to Genomic Sequence Alignment. SIAM J. Comput. 38 (3) (2008)
Huy Hoang Do, Kwok Pui Choi, Franco P. Preparata, Wing-Kin Sung, Louxin Zhang
Repeat Detection in Genomic Sequences. J. Comput. Biol. 15 (5) (2008)
Jinsong Tan, Kok Seng Chua, Louxin Zhang, Song Zhu
Algorithmic and Complexity Issues of Three Clustering Methods in Microarray Data Analysis. Algorithmica 48 (2) (2007)
C. Thach Nguyen, Jian Shen, Minmei Hou, Li Sheng, Webb Miller, Louxin Zhang
Approximating the spanning star forest problem and its applications to genomic sequence alignment. SODA (2007)
Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler
A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications. RECOMB-CG (2007)
Min Xu, Louxin Zhang, Pei Li Joe Zhou
A Robust Method for Generating Discriminative Gene Clusters. BIBE (2007)
Jinsong Tan, Louxin Zhang
The Consecutive Ones Submatrix Problem for Sparse Matrices. Algorithmica 48 (3) (2007)
Louxin Zhang
Superiority of Spaced Seeds for Homology Search. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (3) (2007)
Guoliang Li, Jian Ma, Louxin Zhang
Selecting Genomes for Reconstruction of Ancestral Genomes. RECOMB-CG (2007)
C. Thach Nguyen, Nguyen Bao Nguyen, Wing-Kin Sung, Louxin Zhang
Reconstructing Recombination Network from Sequence Data: The Small Parsimony Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (3) (2007)
Ming Li, Bin Ma, Louxin Zhang
Superiority and complexity of the spaced seeds. SODA (2006)
Guillaume Bourque, Louxin Zhang
Models and Methods in Comparative Genomics. Adv. Comput. 68 (2006)
Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller
Controlling Size When Aligning Multiple Genomic Sequences with Duplications. WABI (2006)
Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna
Procrastination Leads to Efficient Filtration for Local Multiple Alignment. WABI (2006)
Franco P. Preparata, Louxin Zhang, Kwok Pui Choi
Quick, Practical Selection of Effective Seeds for Homology Search. J. Comput. Biol. 12 (9) (2005)
C. Thach Nguyen, Y. C. Tay, Louxin Zhang
Divide-and-conquer approach for the exemplar breakpoint distance. Bioinform. 21 (10) (2005)
Jinsong Tan, Kok Seng Chua, Louxin Zhang
Algorithmic and Complexity Issues of Three Clustering Methods in Microarray Data Analysis. COCOON (2005)
Guoliang Li, Tze-Yun Leong, Louxin Zhang
Translation Initiation Sites Prediction with Mixture Gaussian Models in Human cDNA Sequences. IEEE Trans. Knowl. Data Eng. 17 (8) (2005)
Kwok Pui Choi, Louxin Zhang
Sensitivity analysis and efficient method for identifying optimal spaced seeds. J. Comput. Syst. Sci. 68 (1) (2004)
Oscar H. Ibarra, Louxin Zhang
Computing And Combinatorics Conference -- Cocoon'02. Int. J. Found. Comput. Sci. 15 (1) (2004)
Jinsong Tan, Louxin Zhang
Approximation Algorithms for the Consecutive Ones Submatrix Problem on Sparse Matrices. ISAAC (2004)
Guoliang Li, Tze-Yun Leong, Louxin Zhang
Translation Initiation Sites Prediction with Mixture Gaussian Models. WABI (2004)
Kwok Pui Choi, Fanfan Zeng, Louxin Zhang
Good Spaced Seeds For Homology Search. BIBE (2004)
Kwok Pui Choi, Fanfan Zeng, Louxin Zhang
Good spaced seeds for homology search. Bioinform. 20 (7) (2004)
Louxin Zhang, Bin Ma, Lusheng Wang, Ying Xu
Greedy method for inferring tandem duplication history. Bioinform. 19 (12) (2003)
J. Kevin Lanctôt, Ming Li, Bin Ma, Shaojiu Wang, Louxin Zhang
Distinguishing string selection problems. Inf. Comput. 185 (1) (2003)
Louxin Zhang, Bin Ma, Lusheng Wang
Efficient Methods for Inferring Tandem Duplication History. WABI (2002)
Louxin Zhang, Song Zhu
A New Clustering Method for Microarray Data Analysis. CSB (2002)
Lusheng Wang, Kaizhong Zhang, Louxin Zhang
Perfect phylogenetic networks with recombination. SAC (2001)
Lusheng Wang, Kaizhong Zhang, Louxin Zhang
Perfect Phylogenetic Networks with Recombination. J. Comput. Biol. 8 (1) (2001)
Louxin Zhang, Chew-Kiat Heng, Tin Wee Tan
Cladogramer: incorporating haplotype frequency into cladogram analysis. Bioinform. 17 (5) (2001)
Louxin Zhang, Song Zhu
Complexity Study on Two Clustering Problems. ISAAC (2001)
Bin Ma, Ming Li, Louxin Zhang
From Gene Trees to Species Trees. SIAM J. Comput. 30 (3) (2000)

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Publication Activity (10 Years)

Top Topics

Top Venues

Louxin Zhang