David Posada

Publication Activity (10 Years)

Years Active: 1998-2022
Publications (10 Years): 4

Top Topics

Heterogeneous Environments

Top Venues

Int. J. Grid High Perform. Comput.

Int. J. High Perform. Comput. Appl.

Publications

Davide Maspero, Fabrizio Angaroni, Lucrezia Patruno, Daniele Ramazzotti, David Posada, Alex Graudenzi
Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data. WIVACE (2022)
Merly Escalona, Sara Rocha, David Posada
NGSphy: phylogenomic simulation of next-generation sequencing data. Bioinform. 34 (14) (2018)
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34 (21) (2018)
Manuel Aurelio Rodriguez Pascual, Christos Kanellopoulos, Antonio J. Rubio-Montero, Diego Darriba, Ognjen Prnjat, David Posada, Rafael Mayo-García
Adapting Reproducible Research Capabilities to Resilient Distributed Calculations. Int. J. Grid High Perform. Comput. 8 (1) (2016)
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
High-performance computing selection of models of DNA substitution for multicore clusters. Int. J. High Perform. Comput. Appl. 28 (1) (2014)
Jose Manuel Santorum, Diego Darriba, Guillermo L. Taboada, David Posada
.org: selection of nucleotide substitution models on the cloud. Bioinform. 30 (9) (2014)
Miguel Arenas, Helena G. Dos Santos, David Posada, Ugo Bastolla
Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinform. 29 (23) (2013)
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
HPC selection of models of DNA substitution. CMSB (2011)
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
ProtTest 3: fast selection of best-fit models of protein evolution. Bioinform. 27 (8) (2011)
Darren P. Martin, Philippe Lemey, Martin Lott, Vincent Moulton, David Posada, Pierre Lefeuvre
RDP3: a flexible and fast computer program for analyzing recombination. Bioinform. 26 (19) (2010)
Daniel Glez-Peña, Daniel Gómez-Blanco, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David Posada
ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Miguel Arenas, Mateus Patricio, David Posada, Gabriel Valiente
Characterization of phylogenetic networks with NetTest. BMC Bioinform. 11 (2010)
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution. Euro-Par Workshops (2010)
Marta Loureiro, Miguel Pan, Manuel Aurelio Rodriguez Pascual, David Posada, Rafael Mayo
Grid selection of models of nucleotide substitution. HealthGrid (2010)
Mateus Patricio, Federico Abascal, Rafael Zardoya, David Posada
Accurate Selection of Models of Protein Evolution. IWPACBB (2010)
Sergei L. Kosakovsky Pond, David Posada, Eric Stawiski, Colombe Chappey, Art F. Y. Poon, Gareth Hughes, Esther Fearnhill, Mike B. Gravenor, Andrew J. Leigh Brown, Simon D. W. Frost
An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1. PLoS Comput. Biol. 5 (11) (2009)
Mateus Patricio, Jaime Huerta-Cepas, Toni Gabaldón, Rafael Zardoya, David Posada
Automatic Prediction of the Genetic Code. IWANN (2) (2009)
Miguel Arenas, David Posada
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography. BMC Bioinform. 8 (2007)
Federico Abascal, Rafael Zardoya, David Posada
GenDecoder: genetic code prediction for metazoan mitochondria. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
David Posada
ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Sergei L. Kosakovsky Pond, David Posada, Michael B. Gravenor, Christopher H. Woelk, Simon D. W. Frost
GARD: a genetic algorithm for recombination detection. Bioinform. 22 (24) (2006)
Darren P. Martin, Carolyn Williamson, David Posada
RDP2: recombination detection and analysis from sequence alignments. Bioinform. 21 (2) (2005)
Federico Abascal, Rafael Zardoya, David Posada
ProtTest: selection of best-fit models of protein evolution. Bioinform. 21 (9) (2005)
David Posada, Taylor J. Maxwell, Alan R. Templeton
TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees. Bioinform. 21 (9) (2005)
David Posada, Carsten Wiuf
Simulating haplotype blocks in the human genome. Bioinform. 19 (2) (2003)
Mark J. Clement, Quinn Snell, Peter Walker, David Posada, Keith A. Crandall
TCS: Estimating Gene Genealogies. IPDPS (2002)
David Posada, Keith A. Crandall
MODELTEST: testing the model of DNA substitution. Bioinform. 14 (9) (1998)