Ugo Bastolla

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 7

Top Topics

Physicochemical Properties

Ridge Regression

Computational Biology

Multiple Alignment

Top Venues

J. Chem. Inf. Model.

PeerJ Comput. Sci.

Publications

Iván Martín Hernández, Yves Dehouck, Ugo Bastolla, José Ramón López-Blanco, Pablo Chacón
Predicting protein stability changes upon mutation using a simple orientational potential. Bioinform. 39 (1) (2023)
Ugo Bastolla, David Abia, Oscar Piette
PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score. Bioinform. 39 (10) (2023)
José Ramón López-Blanco, Yves Dehouck, Ugo Bastolla, Pablo Chacón
Local Normal Mode Analysis for Fast Loop Conformational Sampling. J. Chem. Inf. Model. 62 (18) (2022)
Ugo Bastolla, Yves Dehouck
Can Conformational Changes of Proteins Be Represented in Torsion Angle Space? A Study with Rescaled Ridge Regression. J. Chem. Inf. Model. 59 (11) (2019)
Alvaro Alfayate, Carlos Rodriguez Caceres, Helena G. Dos Santos, Ugo Bastolla
Predicted dynamical couplings of protein residues characterize catalysis, transport and allostery. Bioinform. 35 (23) (2019)
Gonzalo S. Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García
Learning structural bioinformatics and evolution with a snake puzzle. PeerJ Comput. Sci. 2 (2016)
Gonzalo S. Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García
Learning protein folding and evolution with a snake puzzle. PeerJ Prepr. 4 (2016)
Miguel Arenas, Helena G. Dos Santos, David Posada, Ugo Bastolla
Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinform. 29 (23) (2013)
Florian Teichert, Jonas Minning, Ugo Bastolla, Markus Porto
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH. BMC Bioinform. 11 (2010)
Raul Mendez, Miriam Fritsche, Markus Porto, Ugo Bastolla
Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations. PLoS Comput. Biol. 6 (5) (2010)
Alberto Pascual-García, David Abia, Angel R. Ortiz, Ugo Bastolla
Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures. PLoS Comput. Biol. 5 (3) (2009)
Florian Teichert, Ugo Bastolla, Markus Porto
Protein Structure Alignment through a Contact Topology Profile using SABERTOOTH. German Conference on Bioinformatics (2008)
Florian Teichert, Ugo Bastolla, Markus Porto
SABERTOOTH: protein structural alignment based on a vectorial structure representation. BMC Bioinform. 8 (2007)
Eduardo Huedo, Ugo Bastolla, Rubén S. Montero, Ignacio Martín Llorente
A Framework for Protein Structure Prediction on the Grid. New Gener. Comput. 23 (4) (2005)
Eduardo Huedo, Ugo Bastolla, Rubén S. Montero, Ignacio Martín Llorente
Computational Proteomics on the Grid. New Gener. Comput. 22 (2) (2004)