Pablo Chacón

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 11

Top Topics

Predicting Protein

Graphics Processors

Top Venues

Nucleic Acids Res.

Autom. Control. Comput. Sci.

Publications

Iván Martín Hernández, Yves Dehouck, Ugo Bastolla, José Ramón López-Blanco, Pablo Chacón
Predicting protein stability changes upon mutation using a simple orientational potential. Bioinform. 39 (1) (2023)
A. M. Aly, Pablo Chacón, H. Gol-Zaroudi, J.-W. Choi, G. Voyiadjis
Proposed Practical Overheight Detection and Alert System. Autom. Control. Comput. Sci. 56 (5) (2022)
José Ramón López-Blanco, Yves Dehouck, Ugo Bastolla, Pablo Chacón
Local Normal Mode Analysis for Fast Loop Conformational Sampling. J. Chem. Inf. Model. 62 (18) (2022)
Alberto Pepe, Joan Lasenby, Pablo Chacón
Using a Graph Transformer Network to Predict 3D Coordinates of Proteins via Geometric Algebra Modelling. ENGAGE (2022)
Maria Kadukova, Karina dos Santos Machado, Pablo Chacón, Sergei Grudinin
KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions. Bioinform. 37 (7) (2021)
Chloé Quignot, Guillaume Postic, Hélène Bret, Julien Rey, Pierre Granger, Samuel Murail, Pablo Chacón, Jessica Andreani, Pierre Tufféry, Raphaël Guérois
InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Chloé Quignot, Pierre Granger, Pablo Chacón, Raphaël Guérois, Jessica Andreani
Atomic-level evolutionary information improves protein-protein interface scoring. Bioinform. 37 (19) (2021)
José Ramón López-Blanco, Pablo Chacón
KORP: knowledge-based 6D potential for fast protein and loop modeling. Bioinform. 35 (17) (2019)
Erney Ramirez Aportela, José Ramón López-Blanco, Pablo Chacón
FRODOCK 2.0: fast protein-protein docking server. Bioinform. 32 (15) (2016)
José Ignacio Aliaga, Pedro Alonso, José M. Badía, Pablo Chacón, Davor Davidovic, José Ramón López-Blanco, Enrique S. Quintana-Ortí
A fast band-Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors. J. Comput. Phys. 309 (2016)
José Ramón López-Blanco, Alejandro Jesús Canosa-Valls, Yaohang Li, Pablo Chacón
RCD+: Fast loop modeling server. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Santiago Garcia Sanchez, Erney Ramirez Aportela, José Ignacio Garzón, Pablo Chacón, Antonio S. Montemayor, Raúl Cabido
FRODRUG: A Virtual Screening GPU Accelerated Approach for Drug Discovery. PDP (2014)
José Ramón López-Blanco, José Ignacio Aliaga, Enrique S. Quintana-Ortí, Pablo Chacón
iMODS: internal coordinates normal mode analysis server. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
José Ramón López-Blanco, Ruymán Reyes, José Ignacio Aliaga, Rosa M. Badia, Pablo Chacón, Enrique S. Quintana-Ortí
Exploring large macromolecular functional motions on clusters of multicore processors. J. Comput. Phys. 246 (2013)
Pieter Chys, Pablo Chacón
Spinor product computations for protein conformations. J. Comput. Chem. 33 (21) (2012)
José Ramón López-Blanco, José Ignacio Garzón, Pablo Chacón
iMod: multipurpose normal mode analysis in internal coordinates. Bioinform. 27 (20) (2011)
José Ignacio Garzón, Eduardo Huedo, Rubén Santiago Montero, Ignacio Martín Llorente, Pablo Chacón
End-To-End Cache System for Grid Computing: Design and Efficiency Analysis of a High-Throughput Bioinformatic Docking Application. Int. J. High Perform. Comput. Appl. 24 (3) (2010)
José Ignacio Garzón, José Ramón López-Blanco, Carles Pons, Julio A. Kovacs, Ruben Abagyan, Juan Fernández-Recio, Pablo Chacón
FRODOCK: a new approach for fast rotational protein-protein docking. Bioinform. 25 (19) (2009)
José Ignacio Garzón, Julio A. Kovacs, Ruben Abagyan, Pablo Chacón
DFprot: a webtool for predicting local chain deformability. Bioinform. 23 (7) (2007)
José Ignacio Garzón, Eduardo Huedo, Rubén S. Montero, Ignacio Martín Llorente, Pablo Chacón
Adaptation of a Multi-Resolution Docking Bioinformatics Application to the Grid. J. Softw. 2 (2) (2007)
José Ignacio Garzón, Eduardo Huedo, Rubén S. Montero, Ignacio Martín Llorente, Pablo Chacón
Grid Multi-Resolution Docking. PDP (2007)
José Ignacio Garzón, Julio A. Kovacs, Ruben Abagyan, Pablo Chacón
ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage. Bioinform. 23 (4) (2007)
Willy Wriggers, Pablo Chacón, Julio A. Kovacs, Florence Tama, Stefan Birmanns
Topology representing neural networks reconcile biomolecular shape, structure, and dynamics. Neurocomputing 56 (2004)
Juan Carlos Nuño, Pablo Chacón, Alvaro Moreno, Federico Morán
Compartimentation in Replicator Models. ECAL (1995)