Julien Rey

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 10

Top Topics

Tandem Mass Spectrometry

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

J. Chem. Inf. Model.

Publications

Julien Rey, Samuel Murail, Sjoerd Jacob de Vries, Philippe Derreumaux, Pierre Tufféry
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution. Nucleic Acids Res. 51 (W1) (2023)
Florent Barbault, Éric Brémond, Julien Rey, Pierre Tufféry, François Maurel
DockSurf: A Molecular Modeling Software for the Prediction of Protein/Surface Adhesion. J. Chem. Inf. Model. 63 (16) (2023)
Guillaume Postic, Jessica Andreani, Julien Marcoux, Victor Reys, Raphaël Guérois, Julien Rey, Emmanuelle Mouton-Barbosa, Yves Vandenbrouck, Sarah Cianférani, Odile Burlet-Schiltz, Gilles Labesse, Pierre Tufféry
Proteo3Dnet: a web server for the integration of structural information with interactomics data. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Chloé Quignot, Guillaume Postic, Hélène Bret, Julien Rey, Pierre Granger, Samuel Murail, Pablo Chacón, Jessica Andreani, Pierre Tufféry, Raphaël Guérois
InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Julien Rey, Inès Rasolohery, Pierre Tufféry, Frédéric Guyon, Gautier Moroy
PatchSearch: a web server for off-target protein identification. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Yasaman Karami, Julien Rey, Guillaume Postic, Samuel Murail, Pierre Tufféry, Sjoerd J. de Vries
DaReUS-Loop: a web server to model multiple loops in homology models. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Chloé Quignot, Julien Rey, Jinchao Yu, Pierre Tufféry, Raphaël Guérois, Jessica Andreani
InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Sjoerd J. de Vries, Julien Rey, Christina E. M. Schindler, Martin Zacharias, Pierre Tufféry
The pepATTRACT web server for blind, large-scale peptide-protein docking. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Jinchao Yu, Marek Vavrusa, Jessica Andreani, Julien Rey, Pierre Tufféry, Raphaël Guérois
InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Alexis Lamiable, Pierre Thévenet, Julien Rey, Marek Vavrusa, Philippe Derreumaux, Pierre Tufféry
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Frédéric Guyon, François Martz, Marek Vavrusa, Jérôme Bécot, Julien Rey, Pierre Tufféry
BCSearch: fast structural fragment mining over large collections of protein structures. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Céline M. Labbé, Julien Rey, David Lagorce, Marek Vavrusa, Jérôme Bécot, Olivier Sperandio, Bruno O. Villoutreix, Pierre Tufféry, Maria A. Miteva
MTiOpenScreen: a web server for structure-based virtual screening. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Julien Rey, Patrick Deschavanne, Pierre Tufféry
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes. Database J. Biol. Databases Curation 2014 (2014)
Adrien Saladin, Julien Rey, Pierre Thévenet, Martin Zacharias, Gautier Moroy, Pierre Tufféry
PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Julien Rey, Patrick Deschavanne, Pierre Tufféry
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes. Database J. Biol. Databases Curation 2014 (2014)