Sjoerd Jacob de Vries

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 4

Top Topics

Protein Sequences

Steerable Filters

Sequence Alignment

Top Venues

J. Chem. Inf. Model.

Nucleic Acids Res.

Publications

Anna Kravchenko, Sjoerd Jacob de Vries, Malika Smaïl-Tabbone, Isaure Chauvot de Beauchêne
HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses. BMC Bioinform. 25 (1) (2024)
Yasaman Karami, Samuel Murail, Julien Giribaldi, Benjamin Lefranc, Florian Defontaine, Olivier Lesouhaitier, Jérôme Leprince, Sjoerd Jacob de Vries, Pierre Tufféry
Exploring a Structural Data Mining Approach to Design Linkers for Head-to-Tail Peptide Cyclization. J. Chem. Inf. Model. 63 (20) (2023)
Julien Rey, Samuel Murail, Sjoerd Jacob de Vries, Philippe Derreumaux, Pierre Tufféry
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution. Nucleic Acids Res. 51 (W1) (2023)
Antoine Moniot, Yann Guermeur, Sjoerd Jacob de Vries, Isaure Chauvot de Beauchêne
ProtNAff: protein-bound Nucleic Acid filters and fragment libraries. Bioinform. 38 (16) (2022)