Malika Smaïl-Tabbone

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 24

Top Topics

Int J Imaging Syst Technol

Protein Function

Randomized Trees

Top Venues

Knowl. Based Syst.

Publications

Anna Kravchenko, Sjoerd Jacob de Vries, Malika Smaïl-Tabbone, Isaure Chauvot de Beauchêne
HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses. BMC Bioinform. 25 (1) (2024)
Emmanuel Bresso, Joao-Pedro Ferreira, Nicolas Girerd, Masatake Kobayashi, Grégoire Preud'homme, Patrick Rossignol, Fayez Zannad, Marie-Dominique Devignes, Malika Smaïl-Tabbone
Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project. J. Biomed. Informatics 135 (2022)
Md. Kamrul Islam, Sabeur Aridhi, Malika Smaïl-Tabbone
Negative sampling and rule mining for explainable link prediction in knowledge graphs. Knowl. Based Syst. 250 (2022)
Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone
From quantitative SBML models to Boolean networks. Appl. Netw. Sci. 7 (1) (2022)
Marcelo B. A. Veras, Bishnu Sarker, Sabeur Aridhi, João P. P. Gomes, José A. F. de Macêdo, Engelbert Mephu Nguifo, Marie-Dominique Devignes, Malika Smaïl-Tabbone
On the design of a similarity function for sparse binary data with application on protein function annotation. Knowl. Based Syst. 238 (2022)
Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone
From Quantitative SBML Models to Boolean Networks. COMPLEX NETWORKS (2021)
Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone
Automatic Synthesis of Boolean Networks from Biological Knowledge and Data. OLA (2021)
Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet
Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Md. Kamrul Islam, Sabeur Aridhi, Malika Smaïl-Tabbone
Simple Negative Sampling for Link Prediction in Knowledge Graphs. COMPLEX NETWORKS (2021)
Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet
Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. ALGOS (2020)
Md. Kamrul Islam, Sabeur Aridhi, Malika Smaïl-Tabbone
A comparative study of similarity-based and GNN-based link prediction approaches. CoRR (2020)
Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet
Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. CoRR (2020)
Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet
Investigating ADR mechanisms with knowledge graph mining and explainable AI. CoRR (2020)
Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
Computing Vertex-Vertex Dissimilarities Using Random Trees: Application to Clustering in Graphs. IDA (2020)
Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
Unsupervised extra trees: a stochastic approach to compute similarities in heterogeneous data. Int. J. Data Sci. Anal. 9 (4) (2020)
Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
Les forêts d'arbres extrêmement aléatoires : utilisation dans un cadre non supervisé. EGC (2019)
Kevin Dalleau, Miguel Couceiro, Malika Smaïl-Tabbone
Unsupervised Extremely Randomized Trees. PAKDD (3) (2018)
Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach. SWAT4LS (2018)
Yelen Per, Kevin Dalleau, Malika Smaïl-Tabbone
Exploration et analyses multi-objectifs de séries temporelles de données météorologiques. EGC (2018)
Yelen Per, Kevin Dalleau, Malika Smaïl-Tabbone
Prédiction de défauts dans les arbres du parc végétal Grenoblois et préconisations pour les futures plantations. EGC (2017)
Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. 8 (1) (2017)
Sabeur Aridhi, Seyed Ziaeddin Alborzi, Malika Smaïl-Tabbone, Marie-Dominique Devignes, David W. Ritchie
Neighborhood-Based Label Propagation in Large Protein Graphs. CoRR (2017)
Adrien Coulet, Malika Smaïl-Tabbone
Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics. ERCIM News 2016 (104) (2016)
Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
Kbdock - Searching and Organising the Structural Space of Protein-Protein Interactions. ERCIM News 2016 (104) (2016)
Anisah W. Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
KBDOCK 2013: a spatial classification of 3D protein domain family interactions. Nucleic Acids Res. 42 (Database-Issue) (2014)
Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability. DILS (2014)
Rachid Hafiane, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Salvatore Tabbone
Clustering optimal de gènes fondé sur une mesure de similarité sémantique. CORIA (2013)
Mehwish Alam, Melisachew Wudage Chekol, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology. DMoLD (2013)
Emmanuel Bresso, Renaud Grisoni, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Marie-Dominique Devignes, Malika Smaïl-Tabbone
Integrative relational Machine-Learning Approach for Understanding Drug Side-Effect Profiles. BMC Bioinform. 14 (2013)
Marie-Dominique Devignes, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. Int. J. Comput. Biol. Drug Des. 5 (3/4) (2012)
Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
ILP Characterization of 3D Protein-Binding Sites and FCA-Based Interpretation. IC3K (2012)
Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Formal Concept Analysis for the Interpretation of Relational Learning Applied on 3D Protein-binding Sites. KDIR (2012)
Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
Formal Concept Analysis Applied to Transcriptomic Data. FCA4AI@ECAI (2012)
Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone
Formal Concept Analysis Applied to Transcriptomic Data. CLA (2012)
Anisah W. Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
Spatial clustering of protein binding sites for template based protein docking. Bioinform. 27 (20) (2011)
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis. BIBM Workshops (2011)
Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Amedeo Napoli, Marie-Dominique Devignes
Use of Domain Knowledge for Dimension Reduction - Application to Mining of Drug Side Effects. KDIR (2011)
Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Emmanuel Bresso, Amedeo Napoli, Malika Smaïl-Tabbone
BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery. Int. J. Metadata Semant. Ontologies 5 (3) (2010)
Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes
IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinform. 11 (2010)
Leo Ghemtio, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Michel Souchet, Vincent Leroux, Bernard Maigret
Comparison of Three Preprocessing Filters Efficiency in Virtual Screening: Identification of New Putative LXRβ Regulators As a Test Case. J. Chem. Inf. Model. 50 (5) (2010)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Connaissances de domaine et treillis de concepts pour l'exploration progressive de données complexes. IC (2010)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Using Domain Knowledge to Guide Lattice-based Complex Data Exploration. ECAI (2010)
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch, Ngoc-Hoan Nguyen, Wolfgang Raffelsberger
Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle. INFORSID (2009)
Leo Ghemtio, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Michel Souchet, Bernard Maigret
A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening. KDIR (2009)
Saliha Yilmaz, Philippe Jonveaux, Cedric Bicep, Laurent Pierron, Malika Smaïl-Tabbone, Marie-Dominique Devignes
Gene-disease relationship discovery based on model-driven data integration and database view definition. Bioinform. 25 (2) (2009)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval. ECAI (2008)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Extending Attribute Dependencies for Lattice-Based Querying and Navigation. ICCS (2008)
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
Role Assertion Analysis: a proposed method for ontology refinement through assertion learning. STAIRS (2008)
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics. Description Logics (2008)
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
Ontology-guided data preparation for discovering genotype-phenotype relationships. BMC Bioinform. 9 (S-4) (2008)
Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Amedeo Napoli, Malika Smaïl-Tabbone
BioRegistry: automatic extraction of metadata for biological database retrieval and discovery. iiWAS (2008)
Marie-Dominique Devignes, Malika Smaïl-Tabbone
Workshop PC Chairs' Message. WISE Workshops (2007)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Traitement d'attributs inter-dépendants pour la recherche d'information par treillis. Actes d'IC (2007)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Treillis de concepts et ontologies pour interroger l'annuaire de sources de données biologiques BioRegistry. Ingénierie des Systèmes d Inf. 11 (1) (2006)
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing. OTM Workshops (1) (2006)
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies. DILS (2006)
Nizar Messai, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli
Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry) CoRR (2005)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Méthode sémantique pour la classification et l'iinterrogation de sources de données biologiques. EGC (Ateliers) (2005)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Querying a Bioinformatic Data Sources Registry with Concept Lattices. ICCS (2005)
Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes
BioRegistry: A Structured Metadata Repository for Bioinformatic Databases. CompLife (2005)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry). INFORSID (2005)
Brigitte Simonnot, Malika Smaïl-Tabbone
Modèle flexible pour la recherche interactive de documents multimédias. INFORSID (1995)