Marie-Dominique Devignes

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 18

Top Topics

Semantic Similarity

Galois Lattices

Top Venues

J. Biomed. Semant.

Publications

Alban Gaignard, Thomas Rosnet, Frédéric de Lamotte, Vincent Lefort, Marie-Dominique Devignes
FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards. J. Biomed. Semant. 14 (1) (2023)
Emmanuel Bresso, Joao-Pedro Ferreira, Nicolas Girerd, Masatake Kobayashi, Grégoire Preud'homme, Patrick Rossignol, Fayez Zannad, Marie-Dominique Devignes, Malika Smaïl-Tabbone
Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project. J. Biomed. Informatics 135 (2022)
Aria Gheeraert, Laurent Vuillon, Laurent Chaloin, Olivier Moncorgé, Thibaut Very, Serge Perez, Vincent Leroux, Isaure Chauvot de Beauchêne, Dominique Mias-Lucquin, Marie-Dominique Devignes, Ivan Rivalta, Bernard Maigret
Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis. J. Chem. Inf. Model. 62 (12) (2022)
Alexandre Bazin, Miguel Couceiro, Marie-Dominique Devignes, Amedeo Napoli
Steps towards causal Formal Concept Analysis. Int. J. Approx. Reason. 142 (2022)
Marcelo B. A. Veras, Bishnu Sarker, Sabeur Aridhi, João P. P. Gomes, José A. F. de Macêdo, Engelbert Mephu Nguifo, Marie-Dominique Devignes, Malika Smaïl-Tabbone
On the design of a similarity function for sparse binary data with application on protein function annotation. Knowl. Based Syst. 238 (2022)
Akrem Sellami, Bishnu Sarker, Salvatore Tabbone, Marie-Dominique Devignes, Sabeur Aridhi
A Semi-supervised Graph Deep Neural Network for Automatic Protein Function Annotation. IWBBIO (2) (2022)
Bishnu Sarker, Navya Khare, Marie-Dominique Devignes, Sabeur Aridhi
Improving automatic GO annotation with semantic similarity. BMC Bioinform. (2) (2022)
Seyed Ziaeddin Alborzi, Amina Ahmed Nacer, Hiba Najjar, David W. Ritchie, Marie-Dominique Devignes
PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. PLoS Comput. Biol. 17 (8) (2021)
Alexandre Bazin, Miguel Couceiro, Marie-Dominique Devignes, Amedeo Napoli
An Approach to Identifying the Most Predictive and Discriminant Features in Supervised Classification Problems. ICCS (2021)
Bishnu Sarker, Navya Khare, Marie-Dominique Devignes, Sabeur Aridhi
Graph Based Automatic Protein Function Annotation Improved by Semantic Similarity. IWBBIO (2020)
Alexandre Bazin, Miguel Couceiro, Marie-Dominique Devignes, Amedeo Napoli
Explaining Multicriteria Decision Making with Formal Concept Analysis. CLA (2020)
Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach. SWAT4LS (2018)
Seyed Ziaeddin Alborzi, David W. Ritchie, Marie-Dominique Devignes
Computational discovery of direct associations between GO terms and protein domains. BMC Bioinform. (14) (2018)
Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David W. Ritchie
ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains. BMC Bioinform. 18 (1) (2017)
Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. 8 (1) (2017)
Sabeur Aridhi, Seyed Ziaeddin Alborzi, Malika Smaïl-Tabbone, Marie-Dominique Devignes, David W. Ritchie
Neighborhood-Based Label Propagation in Large Protein Graphs. CoRR (2017)
Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David W. Ritchie
Associating Gene Ontology Terms with Pfam Protein Domains. IWBBIO (2) (2017)
Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
Kbdock - Searching and Organising the Structural Space of Protein-Protein Interactions. ERCIM News 2016 (104) (2016)
Anisah W. Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
KBDOCK 2013: a spatial classification of 3D protein domain family interactions. Nucleic Acids Res. 42 (Database-Issue) (2014)
Marie-Dominique Devignes, Yves Moreau
European Conference on Computational Biology. Bioinform. 30 (17) (2014)
Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability. DILS (2014)
Rachid Hafiane, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Salvatore Tabbone
Clustering optimal de gènes fondé sur une mesure de similarité sémantique. CORIA (2013)
Emmanuel Bresso, Renaud Grisoni, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Marie-Dominique Devignes, Malika Smaïl-Tabbone
Integrative relational Machine-Learning Approach for Understanding Drug Side-Effect Profiles. BMC Bioinform. 14 (2013)
Marie-Dominique Devignes, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. Int. J. Comput. Biol. Drug Des. 5 (3/4) (2012)
Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
ILP Characterization of 3D Protein-Binding Sites and FCA-Based Interpretation. IC3K (2012)
Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Formal Concept Analysis for the Interpretation of Relational Learning Applied on 3D Protein-binding Sites. KDIR (2012)
Anisah W. Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W. Ritchie
Spatial clustering of protein binding sites for template based protein docking. Bioinform. 27 (20) (2011)
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis. BIBM Workshops (2011)
Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Amedeo Napoli, Marie-Dominique Devignes
Use of Domain Knowledge for Dimension Reduction - Application to Mining of Drug Side Effects. KDIR (2011)
Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Emmanuel Bresso, Amedeo Napoli, Malika Smaïl-Tabbone
BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery. Int. J. Metadata Semant. Ontologies 5 (3) (2010)
Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes
IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinform. 11 (2010)
Leo Ghemtio, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Michel Souchet, Vincent Leroux, Bernard Maigret
Comparison of Three Preprocessing Filters Efficiency in Virtual Screening: Identification of New Putative LXRβ Regulators As a Test Case. J. Chem. Inf. Model. 50 (5) (2010)
Gary Macindoe, Lazaros Mavridis, Vishwesh Venkatraman, Marie-Dominique Devignes, David W. Ritchie
HexServer: an FFT-based protein docking server powered by graphics processors. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Connaissances de domaine et treillis de concepts pour l'exploration progressive de données complexes. IC (2010)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Using Domain Knowledge to Guide Lattice-based Complex Data Exploration. ECAI (2010)
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch, Ngoc-Hoan Nguyen, Wolfgang Raffelsberger
Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle. INFORSID (2009)
Leo Ghemtio, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Michel Souchet, Bernard Maigret
A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening. KDIR (2009)
Saliha Yilmaz, Philippe Jonveaux, Cedric Bicep, Laurent Pierron, Malika Smaïl-Tabbone, Marie-Dominique Devignes
Gene-disease relationship discovery based on model-driven data integration and database view definition. Bioinform. 25 (2) (2009)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval. ECAI (2008)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Extending Attribute Dependencies for Lattice-Based Querying and Navigation. ICCS (2008)
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
Role Assertion Analysis: a proposed method for ontology refinement through assertion learning. STAIRS (2008)
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics. Description Logics (2008)
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
Ontology-guided data preparation for discovering genotype-phenotype relationships. BMC Bioinform. 9 (S-4) (2008)
Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Amedeo Napoli, Malika Smaïl-Tabbone
BioRegistry: automatic extraction of metadata for biological database retrieval and discovery. iiWAS (2008)
Marie-Dominique Devignes, Malika Smaïl-Tabbone
Workshop PC Chairs' Message. WISE Workshops (2007)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Traitement d'attributs inter-dépendants pour la recherche d'information par treillis. Actes d'IC (2007)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Treillis de concepts et ontologies pour interroger l'annuaire de sources de données biologiques BioRegistry. Ingénierie des Systèmes d Inf. 11 (1) (2006)
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing. OTM Workshops (1) (2006)
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies. DILS (2006)
Nizar Messai, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli
Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry) CoRR (2005)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Méthode sémantique pour la classification et l'iinterrogation de sources de données biologiques. EGC (Ateliers) (2005)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Querying a Bioinformatic Data Sources Registry with Concept Lattices. ICCS (2005)
Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes
BioRegistry: A Structured Metadata Repository for Bioinformatic Databases. CompLife (2005)
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry). INFORSID (2005)
Marie-Dominique Devignes, André Schaaff, Malika Smaïl
Collecte et intégration de données biologiques hétérogènes sur le web. Ingénierie des Systèmes d Inf. 7 (1-2) (2002)