Olivier Poch

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 8

Top Topics

Transcription Factors

Gene Prediction

Top Venues

IBM J. Res. Dev.

Publications

Arnaud Kress, Olivier Poch, Odile Lecompte, Julie Dawn Thompson
Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events. Frontiers Bioinform. 3 (2023)
Nicolas Scalzitti, Arnaud Kress, Romain Orhand, Thomas Weber, Luc Moulinier, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson
Spliceator: multi-species splice site prediction using convolutional neural networks. BMC Bioinform. 22 (1) (2021)
Julie Dawn Thompson, Raymond Ripp, Claudine Mayer, Olivier Poch, Christian J. Michel
circular code in the regulation of gene expression. Biosyst. 203 (2021)
Corentin Meyer, Nicolas Scalzitti, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson
Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes. BMC Bioinform. 21 (1) (2020)
Gopal Dila, Christian J. Michel, Olivier Poch, Raymond Ripp, Julie Dawn Thompson
Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes. Biosyst. 175 (2019)
Yannis Nevers, Arnaud Kress, Audrey Defosset, Raymond Ripp, Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte
OrthoInspector 3.0: open portal for comparative genomics. Nucleic Acids Res. 47 (Database-Issue) (2019)
Arnaud Kress, Odile Lecompte, Olivier Poch, Julie Dawn Thompson
PROBE: analysis and visualization of protein block-level evolution. Bioinform. 34 (19) (2018)
Renaud Vanhoutrève, Arnaud Kress, Baptiste Legrand, Hélène Gass, Olivier Poch, Julie Dawn Thompson
LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system. BMC Bioinform. 17 (2016)
Benjamin Linard, Alexis Allot, Raphael Schneider, Can Morel, Raymond Ripp, Marc Bigler, Julie Dawn Thompson, Olivier Poch, Odile Lecompte
OrthoInspector 2.0: Software and database updates. Bioinform. 31 (3) (2015)
Carlos Bermejo-Das-Neves, Hoan-Ngoc Nguyen, Olivier Poch, Julie Dawn Thompson
A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i). BMC Bioinform. 15 (2014)
Walyd Khenoussi, Renaud Vanhoutrève, Olivier Poch, Julie Dawn Thompson
SIBIS: a Bayesian model for inconsistent protein sequence estimation. Bioinform. 30 (17) (2014)
Hoan Nguyen, L. Michel, Julie Dawn Thompson, Olivier Poch
Heterogeneous biological data integration with declarative query language. IBM J. Res. Dev. 58 (2/3) (2014)
Alexis Allot, Yannick-Noël Anno, Laetitia Poidevin, Raymond Ripp, Olivier Poch, Odile Lecompte
PARSEC: PAtteRn SEarch and Contextualization. Bioinform. 29 (20) (2013)
Marie-Dominique Devignes, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. Int. J. Comput. Biol. Drug Des. 5 (3/4) (2012)
Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen
KD4v: comprehensible knowledge discovery system for missense variant. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen
MSV3d: database of human MisSense variants mapped to 3D protein structure. Database J. Biol. Databases Curation 2012 (2012)
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
Ontology-based functional classification of genes: Evaluation with reference sets and overlap analysis. BIBM Workshops (2011)
Laurent-Philippe Albou, Olivier Poch, Dino Moras
M-ORBIS: Mapping of mOleculaR Binding sItes and Surfaces. Nucleic Acids Res. 39 (1) (2011)
Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte
OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinform. 12 (2011)
Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes
IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinform. 11 (2010)
Claude Berge, Nicolas Froloff, Ravi Kiran Reddy Kalathur, Myriam Maumy, Olivier Poch, Wolfgang Raffelsberger, Nicolas Wicker
Multidimensional Fitting for Multivariate Data Analysis. J. Comput. Biol. 17 (5) (2010)
Nicolas Bard, Raphael Bolze, Eddy Caron, Frédéric Desprez, Michaël Heymann, Anne Friedrich, Luc Moulinier, Ngoc-Hoan Nguyen, Olivier Poch, Thierry Toursel
Décrypthon Grid - Grid Resources Dedicated to Neuromuscular Disorders. HealthGrid (2010)
Valentín Ruano-Rubio, Olivier Poch, Julie Dawn Thompson
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. BMC Bioinform. 10 (2009)
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch, Ngoc-Hoan Nguyen, Wolfgang Raffelsberger
Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle. INFORSID (2009)
Mohamed Radhouene Aniba, Sophie Siguenza, Anne Friedrich, Frédéric Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie Dawn Thompson
Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis. Briefings Bioinform. 10 (1) (2009)
Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie Dawn Thompson
A new protein linear motif benchmark for multiple sequence alignment software. BMC Bioinform. 9 (2008)
Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch
RReportGenerator: automatic reports from routine statistical analysis using R. Bioinform. 24 (2) (2008)
Hoan Nguyen, Guillaume Berthommier, Anne Friedrich, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Olivier Poch
Introduction du nouveau centre de données biomédicales Décrypthon. CORIA (2008)
Nicolas Wicker, Jean Muller, Ravi Kiran Reddy Kalathur, Olivier Poch
A maximum likelihood approximation method for Dirichlet's parameter estimation. Comput. Stat. Data Anal. 52 (3) (2008)
Anne Friedrich, Raymond Ripp, Nicolas B. Garnier, Emmanuel Bettler, Gilbert Deléage, Olivier Poch, Luc Moulinier
Blast sampling for structural and functional analyses. BMC Bioinform. 8 (2007)
Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice Koehl
A Geometric Representation of Protein Sequences. BIBM (2007)
Agatha Schlüter, Stéphane Fourcade, Enric Domènech-Estévez, Toni Gabaldón, Jaime Huerta-Cepas, Guillaume Berthommier, Raymond Ripp, Ronald J. A. Wanders, Olivier Poch, Aurora Pujol
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Res. 35 (Database-Issue) (2007)
Aurélie Lardenois, Frédéric Chalmel, Laurent Bianchetti, José-Alain Sahel, Thierry Léveillard, Olivier Poch
PromAn: an integrated knowledge-based web server dedicated to promoter analysis. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Nicolas B. Garnier, Anne Friedrich, Raphael Bolze, Emmanuel Bettler, Luc Moulinier, Christophe Geourjon, Julie Dawn Thompson, Gilbert Deléage, Olivier Poch
MAGOS: multiple alignment and modelling server. Bioinform. 22 (17) (2006)
Julie Dawn Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, Frédéric Plewniak, Olivier Poch
MACSIMS : multiple alignment of complete sequences information management system. BMC Bioinform. 7 (2006)
Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte
ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Res. 34 (Database-Issue) (2006)
Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch
GOAnno: GO annotation based on multiple alignment. Bioinform. 21 (9) (2005)
Laurent Bianchetti, Julie Dawn Thompson, Odile Lecompte, Frédéric Plewniak, Olivier Poch
Valid: Validation of Protein Sequence Quality Based on Multiple Alignment Data. J. Bioinform. Comput. Biol. 3 (4) (2005)
Veronique Prigent, Jean-Claude Thierry, Olivier Poch, Frédéric Plewniak
DbW: automatic update of a functional family-specific multiple alignment. Bioinform. 21 (8) (2005)
Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch
RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments. Bioinform. 19 (9) (2003)
Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch
PipeAlign: a new toolkit for protein family analysis. Nucleic Acids Res. 31 (13) (2003)
Anne Bahr, Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations. Nucleic Acids Res. 29 (1) (2001)
Frédéric Plewniak, Julie Dawn Thompson, Olivier Poch
Ballast: Blast post-processing based on locally conserved segments. Bioinform. 16 (9) (2000)
Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch
A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27 (13) (1999)
Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinform. 15 (1) (1999)