PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.
Adrien SaladinJulien ReyPierre ThévenetMartin ZachariasGautier MoroyPierre TufféryPublished in: Nucleic Acids Res. (2014)
Keyphrases
- mass spectrometry
- binding sites
- protein protein
- dna binding
- tandem mass spectrometry
- sequence alignment
- amino acids
- high throughput
- mass spectra
- transcription factor binding sites
- gene expression
- drosophila melanogaster
- regulatory elements
- dna sequences
- microarray
- sequence data
- tandem mass spectra
- transcription factors
- protein interaction
- interaction networks
- protein sequences
- ms ms
- motif discovery
- protein function
- protein families
- biological sequences
- genome wide
- regulatory networks
- influenza virus
- genome sequences
- predicting protein
- statistical significance
- protein structure
- cis regulatory
- gene expression data
- network topology
- computational methods
- coding regions
- protein protein interactions
- data mining tools
- drug discovery